https://github.com/daylily-informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

aws bioinformatics bioinformatics-pipeline budgeting cwl ec2 ephemeral genomic-data-analysis giab human-genome informatics ngs parallel-cluster scalable scaling slurm snakemake snv-call wgs

Last synced: 19 Jun 2025

https://github.com/daylily-informatics/zebra_day

Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.

aws barcode barcode-generator bioinformatics direct-thermal direct-thermal-transfer discovery-service labeling-tool laboratory-automation operations-engineering python salesforce thermal-transfer universal-barcoding zebra zebra-label-printers zebra-printer zpl zpl2png

Last synced: 03 Apr 2026

https://github.com/daylily-informatics/daylily-omics-analysis

(current) Comprehensive WGS omics analysis pipeline ( reads to variants & QC ) : Sequence Platforms ( Illumina, PacBio, ONT, Ultima, Roche )

aws-spot cnv fsx-lustre illumina ngs ont pacbio qc snakemake snv sv wgs

Last synced: 16 Apr 2026

https://github.com/daylily-informatics/fedex_tracking_day

Python Module Interfacing w/The FedEx Tracking API

federated fedex fedex-api fedexapi python python3 shipping simple

Last synced: 24 Sep 2025

https://github.com/daylily-informatics/bloom

Templated Abstract Polymorphic (and opinionated) LIMS

Last synced: 16 May 2026

https://github.com/daylily-informatics/github_markdown_text_colorizer

Service to return images of text where the input text can have font, font size and color set

Last synced: 21 Apr 2026

https://github.com/daylily-informatics/img_stitcher_day

Playing around with merging images taken of the outside of a tube.

Last synced: 05 Mar 2025

https://github.com/daylily-informatics/xcures_day

python wrapper for the xcures REST api

Last synced: 15 Oct 2025

https://github.com/daylily-informatics/daylily_giab_analyses

Last synced: 16 Oct 2025

https://github.com/daylily-informatics/metapub_peep

Slim fastapi / jinja2 web application to expose metapub command line functionality.

Last synced: 24 Oct 2025

https://github.com/daylily-informatics/whats-up-doc

Please write me a python script/tool which will take a pair of fastq files R1 and R2 and subsample the fastq files and suggest details surrounding the posisble source tissue, the organism(s) sequenced, the library prep methods, the sequencing platform and any other useful deriveable info.

Last synced: 15 Feb 2026

https://github.com/daylily-informatics/daylily-ursa

Daylily ephemeral cluster automated analysis workset manager.

Last synced: 09 May 2026

https://github.com/daylily-informatics/jinja2_fmt_day

Simple tool to standardize the indentation of jinja2 files.

Last synced: 08 Jul 2025

https://github.com/daylily-informatics/yaml_config_day

Slim Python yaml Config Manager

configuration python python3 yaml yaml-config yaml-configs yaml-configuration yaml-configurations

Last synced: 05 May 2026

https://github.com/daylily-informatics/snakemake-executor-plugin-pcluster-slurm

slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.

aws aws-parallel-cluster pcluster plugin sbatch slurm snakemake snakemake-plugin

Last synced: 13 Apr 2025

https://github.com/daylily-informatics/daylily-ephemeral-cluster

Breaking out the AWS Parallel Cluster infra from the analysis pipelines

Last synced: 21 May 2026

https://github.com/daylily-informatics/.github

github profile README.md

Last synced: 09 Mar 2026

https://github.com/daylily-informatics/slim_goodie

Minimal http server ( fastapi jinja2 supabase oauth2 )

Last synced: 17 May 2026

https://github.com/daylily-informatics/daylily-omics-references

The code which manages the reference bucket(s) utilized by daylily-omics-analysis and other bioinformatics analyses repos supported to run on daylily-ephemeral-cluster

Last synced: 10 Oct 2025

https://github.com/daylily-informatics/day-rsem-star

Star aligner RSEM processing of rnaseq data.

Last synced: 10 Oct 2025