Projects in Awesome Lists by DigitalSlideArchive
A curated list of projects in awesome lists by DigitalSlideArchive .
https://github.com/DigitalSlideArchive/HistomicsTK
A Python toolkit for pathology image analysis algorithms.
bioimage-informatics computer-vision digital-slide-archive histology machine-learning medical-image-processing python
Last synced: 06 May 2025
https://github.com/digitalslidearchive/histomicstk
A Python toolkit for pathology image analysis algorithms.
bioimage-informatics computer-vision digital-slide-archive histology machine-learning medical-image-processing python
Last synced: 14 May 2025
https://digitalslidearchive.github.io/digital_slide_archive/
The official deployment of the Digital Slide Archive and HistomicsTK.
bioimage-informatics digital-slide-archive hacktoberfest histology histomicstk
Last synced: 06 May 2025
https://github.com/digitalslidearchive/digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
bioimage-informatics digital-slide-archive hacktoberfest histology histomicstk
Last synced: 04 Apr 2025
https://github.com/DigitalSlideArchive/HistomicsUI
A Girder plugin for pathology image annotations and analysis.
bioimage-infomatics digital-slide-archive histology python
Last synced: 06 May 2025
https://github.com/digitalslidearchive/histomicsui
A Girder plugin for pathology image annotations and analysis.
bioimage-infomatics digital-slide-archive histology python
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/tifftools
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
Last synced: 05 Apr 2025
https://github.com/digitalslidearchive/cnncelldetection
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/histomicsstream
A whole-slide image reader for TensorFlow
Last synced: 13 Sep 2025
https://github.com/digitalslidearchive/dsa-wsi-deid
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/digitalslidearchive.info
Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/albench
Benchmarking tool for evaluating Active Learning strategies for machine learning
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/superpixel-classification
A test cli for classifying superpixels with arbitrary labels
Last synced: 08 Aug 2025
https://github.com/digitalslidearchive/annotation-tracker
A Girder plugin for annotation tracking in HistomicsUI
Last synced: 10 Apr 2025
https://github.com/digitalslidearchive/histomicsdetect
A package for cell detection models using TensorFlow
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/large-image-utilities
Experimental utilities for use with large_image
Last synced: 04 Sep 2025
https://github.com/digitalslidearchive/histomics-label
A user-interface used in conjunction with HistomicsUI to facilitate active learning on whole slide images
bioimage-informatics digital-slide-archive guided-labeling histology python whole-slide-annotation whole-slide-images
Last synced: 04 Jul 2025
https://github.com/digitalslidearchive/imagedephi-phase-i
Whole Slide Image Deidentification for PHI
Last synced: 09 Jul 2025
https://github.com/digitalslidearchive/large_image_source_isyntax
A large_image source using the Philips library for isyntax files
Last synced: 17 Jun 2025
https://github.com/digitalslidearchive/import-tracker
A Girder plugin for data import tracking in HistomicsUI
Last synced: 12 Apr 2025
https://github.com/digitalslidearchive/dsa_girder_webix_base_viewer
This is a Webix Based Viewing application template for the DSA that uses Girder API
Last synced: 16 Nov 2025
https://github.com/digitalslidearchive/ansible-role-vips
Ansible role to install VIPS image processing software
Last synced: 12 Jun 2025
https://github.com/digitalslidearchive/histomicstk-similarity
Identify similar tissue within an image using foundational models
Last synced: 28 Jul 2025
https://github.com/digitalslidearchive/dive-dsa
DIVE for Digital Slide Archive
Last synced: 17 Nov 2025
https://github.com/digitalslidearchive/histomics_aws_deployment
Infrastructure-as-code scripts for deploying high-availability, scalable Histomics on AWS
Last synced: 31 Jan 2026
https://github.com/digitalslidearchive/girder_assetstore
A Girder plugin for connecting remote Girder instances as Assetstores
Last synced: 10 Jul 2025
https://github.com/digitalslidearchive/dsa_documentation
Documentation for DSA for ReadTheDocs
Last synced: 26 Jan 2026
https://github.com/digitalslidearchive/digitalslidearchive.github.io
This is a redirect to the main documentation
Last synced: 26 Jan 2026
https://github.com/digitalslidearchive/base_docker_image
This a repository for generating the docker image to be used as a base image by the docker image of HistomicsTK
Last synced: 12 Apr 2025