Projects in Awesome Lists by Ebedthan
A curated list of projects in awesome lists by Ebedthan .
https://github.com/ebedthan/xgt
Efficient and fast querying and parsing of GTDB's data
Last synced: 17 Mar 2025
https://github.com/ebedthan/sabreur
fast, reliable and handy demultiplexing tool for fastx files
bioinformatics demultiplexing rust sequence-analysis
Last synced: 21 Mar 2025
https://github.com/ebedthan/hkgfinder
Find housekeeping genes in prokaryotic (meta)genomic data
bioinformatics housekeeping-genes
Last synced: 10 Apr 2025
https://github.com/ebedthan/hyperex
Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.
16s-rrna bioinformatics rust-lang
Last synced: 12 May 2025
https://github.com/ebedthan/beginr
Provides tutorials to begin smoothly in R
Last synced: 22 Nov 2024
https://github.com/ebedthan/fastchaos
(Integer) chaos game representation for DNA sequences
bioinformatics chaos-game-representation integer-chaos-game-representation rust
Last synced: 16 Mar 2025
https://github.com/ebedthan/corebiota
Probabilistic partition of count data to identify core species
Last synced: 16 Mar 2025
https://github.com/ebedthan/afrods
An R package containing data on key fields for African countries
Last synced: 16 Mar 2025
https://github.com/ebedthan/rhizosolver
RhizoSolver classifies 16s rRNA sequences into the Rhizobiales genus.
16srrna bioinformatics soil-microbiome
Last synced: 16 Mar 2025
https://github.com/ebedthan/thesis
My thesis repository. Powered by thesisdown R package.
bioinformatics microbiology thesis
Last synced: 16 Mar 2025
https://github.com/ebedthan/rgronomics-analysis-workshop-1
Repository of files for my Workshop on Rgronomics analysis
Last synced: 16 Mar 2025
https://github.com/ebedthan/darwin
Create (rapid) neighbor-joining tree from sequences using mash distance
Last synced: 16 Mar 2025
https://github.com/ebedthan/mashphage
Fast and accurate whole-genome clustering of (actino) bacteriophages
bioinformatics clustering genome phages
Last synced: 16 Mar 2025
https://github.com/ebedthan/midas-pub-micro
Analysis Code of MIDAS scientific article #1
Last synced: 12 Mar 2025