Projects in Awesome Lists by INCATools
A curated list of projects in awesome lists by INCATools .
https://github.com/incatools/ontology-development-kit
Ontology lifecycle management
continuous-integration monarchinitiative obo obofoundry ontology owl protege robot travis
Last synced: 22 Jul 2025
https://github.com/incatools/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
apis geneontology monarchinitiative oaklib obofoundry ontology ontology-api owl python rdf semantic-web
Last synced: 12 Apr 2026
https://github.com/incatools/ubergraph
Integrated OBO ontology store
knowledge-graph ncats-translator obofoundry owl rdf
Last synced: 05 Mar 2026
https://github.com/incatools/dead_simple_owl_design_patterns
A simple system for specifying OWL class design patterns for OBO-ish ontologies.
obofoundry odp ontology templates
Last synced: 19 Jun 2025
https://github.com/incatools/semantic-sql
SQL and SQLite builds of OWL ontologies
linkml oaklib obofoundry ontologies owl relation-graph sparql sql
Last synced: 05 Apr 2025
https://github.com/incatools/dosdp-tools
Utility for working with DOSDP design patterns and OWL ontologies
design-patterns dosdp-pattern monarchinitiative obofoundry odp ontology owl
Last synced: 03 Sep 2025
https://github.com/incatools/boomer
Bayesian OWL ontology merging
boomer geneontology monarchinitiative mondo obofoundry ontology-merging owl owl-ontology probabilistic-owl reasoning
Last synced: 01 Mar 2025
https://github.com/incatools/obographviz
Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
graph-visualization graphviz javascript json node obofoundry obographs
Last synced: 11 Apr 2025
https://github.com/INCATools/obographviz
Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
graph-visualization graphviz javascript json node obofoundry obographs
Last synced: 11 Mar 2025
https://github.com/incatools/kgcl-rdflib
Tools for working with KGCL
diff diffs kg knowledge-graph linkml obofoundry ontology ontology-change-language owl rdf semantic-diff
Last synced: 07 Sep 2025
https://github.com/incatools/relation-graph
Materialize OWL existential relations
Last synced: 01 Mar 2025
https://github.com/incatools/kgcl
Datamodel for KGCL (Knowledge Graph Change Language)
kgcl linkml ontology-changes ontology-diffs rdf semantic-web
Last synced: 12 Oct 2025
https://github.com/incatools/ontobot-change-agent
A GitHub bot for modifying ontology resources.
bot change-language kgcl ontology
Last synced: 22 Jul 2025
https://github.com/incatools/environments2wikidata
Mapping of GAZ and ENVO to Wikidata
environmentontology envo gaz mapping obofoundry sssom wikidata
Last synced: 04 Mar 2026
https://github.com/INCATools/neoplasmer
Neoplasm Entity Recognition: matching disease names to ontology classes
cancer entity-matching mondo ncit neoplasm ner nlp obofoundry
Last synced: 11 Mar 2025
https://github.com/incatools/neoplasmer
Neoplasm Entity Recognition: matching disease names to ontology classes
cancer entity-matching mondo ncit neoplasm ner nlp obofoundry
Last synced: 02 Mar 2026
https://github.com/incatools/fantom5-ontology
ontology categorizing samples from FANTOM5 project
Last synced: 06 Mar 2026
https://github.com/incatools/odkrunner
A binary runner for the Ontology Development Kit
Last synced: 27 Feb 2026
https://github.com/incatools/ontology-term-usage
determines how an ontology term has been used
Last synced: 10 May 2026
https://github.com/incatools/pandasaurus_cxg
Ontology enrichment tool for CxG standard AnnData files
Last synced: 07 Apr 2026
https://github.com/incatools/biosample-analysis
analysis of biosamples in INSDC
Last synced: 07 Mar 2026
https://github.com/incatools/pandasaurus
Supporting simple queries over ontology annotations in dataframes, using UberGraph queries
Last synced: 12 Jun 2026
https://github.com/incatools/term-expando
Command line expansion of IDs and controlled terms in documents
Last synced: 06 Oct 2025
https://github.com/incatools/owl_patternizer
generate DOSDP patterns from OWL ontologies
Last synced: 27 Jan 2026
https://github.com/incatools/oakx-plugin-cookiecutter
cookiecutter for OAK plugins
Last synced: 09 Jun 2026
https://github.com/incatools/whelk-paper
Code for Whelk performance analyses
Last synced: 13 May 2026
https://github.com/incatools/figtools
Scala toolkit for analyzing figshare figures
Last synced: 29 Jul 2025
https://github.com/incatools/incatools.github.io
A site for publishing public facing documentation for INCATools
Last synced: 05 Mar 2026
https://github.com/incatools/tetool
NPM CLI tool for creating and manipulating INCA Form configuration files and directories
Last synced: 08 Aug 2025
https://github.com/incatools/odk-robot-plugin
ROBOT plugin for the Ontology Development Kit
Last synced: 28 Jul 2025
https://github.com/incatools/obo-shapes
SHACL and ShEx shapes for validating OBO ontologies
Last synced: 06 Mar 2026