https://github.com/leooojr/pacman

Project M1 BIBS : Pac-Man

Last synced: 21 Mar 2025

https://github.com/leooojr/vcfdelta

VCFDelta

bioinformatics python variant-analysis variant-calling variants vcf vcf-comparison

Last synced: 29 Mar 2025

https://github.com/leooojr/bclconvert-benchmarking

Benchmarking du logiciel BCLconvert

Last synced: 21 Mar 2025

https://github.com/leooojr/reprohackathon

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

apptainer bash bowtie cli cutadapt deseq2 fastqc featurecounts google-cloud-platform hpc nextflow ngs-analysis ngs-pipeline r samtools shell sratoolkit ubuntu

Last synced: 14 Mar 2025