https://github.com/lioscro/ngs-tools

Reusable tools for working with next-generation sequencing (NGS) data

Last synced: 23 Mar 2025

https://github.com/lioscro/pyseq-align

Python interface for seq-align C library

Last synced: 22 Mar 2025

https://github.com/lioscro/fbgbp

Optimized belief propagation on arbitrary graphs with binary states.

belief-propagation markov-random-field

Last synced: 05 Apr 2025

https://github.com/lioscro/alaska-parse

Automated and friendly RNA-seq analysis (migrated to Parse Server)

automation docker docker-compose kallisto parse-server pipeline python3 rna-seq rna-seq-analysis rna-seq-pipeline rna-sequencing sleuth

Last synced: 05 Apr 2025

https://github.com/lioscro/dynast-thesis

Last synced: 22 Mar 2025

https://github.com/lioscro/biorxiv-title-bot

Powers the @biorxivtitlebot Twitter bot.

Last synced: 22 Mar 2025

https://github.com/lioscro/fqc

Detect single-cell technology that was used to generate a set of FASTQ files or a single BAM file.

bam fastq scrna-seq single-cell-rna-seq

Last synced: 22 Mar 2025

https://github.com/lioscro/info

Professional information. Resume, CV, assets used by Github pages website.

Last synced: 22 Mar 2025

https://github.com/lioscro/django-postgres

Template repository for setting up Django with Postgres DB

Last synced: 22 Mar 2025

https://github.com/lioscro/react-bootstrap

Template repository to set up a React app with Bootstrap

Last synced: 22 Mar 2025

https://github.com/lioscro/lfq

Lossless compression of FASTQ sequences.

compression fastq fastq-compression fastq-format lossless-data-compression

Last synced: 22 Mar 2025