Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by MahShaaban
A curated list of projects in awesome lists by MahShaaban .
https://github.com/mahshaaban/pcr
Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data
data-analyses molecular-biology qpcr
Last synced: 11 Nov 2024
https://github.com/mahshaaban/mircancerdb
A database for microRNA-gene/protein expression correlation in cancer.
cancer-genomics database microrna r sqlite tcga-data
Last synced: 11 Nov 2024
https://github.com/mahshaaban/intro_data_r
A gentle introduction to data analysis in R
data-analysis image-analysis qpcr-analysis r
Last synced: 11 Nov 2024
https://github.com/mahshaaban/target
target: An R Package to Predict Combined Function of Transcription Factors
algorithm chip-seq dna-binding gene-regulation r-package transcription-factors
Last synced: 11 Nov 2024
https://github.com/mahshaaban/integratingdatabioc
Source code for the Bioconductor workshop "Integrating gene expression and DNA-binding data using R/Bioconductor"
bioconductor-packages chip-seq gene-expression rna-se transcription-factors
Last synced: 11 Nov 2024
https://github.com/mahshaaban/segmenter
Perform Chromatin Segmentation Analysis in R by Calling ChromHMM
bioconductor chromhmm segmentation-an
Last synced: 11 Nov 2024
https://github.com/mahshaaban/targetshop
Source code for the Bioconductor workshop "IIntegrating ChIP-seq and RNA-seq data in R"
Last synced: 11 Nov 2024
https://github.com/mahshaaban/target_pkg_talk
Code for "target: An R package to Predict Combined Function of Transcription Factors" short talk. BioC Asia 2020.
Last synced: 11 Nov 2024
https://github.com/mahshaaban/chromhmmdata
chromhmmData: Chromosome Size, Coordinates and Anchor Files
Last synced: 11 Nov 2024
https://github.com/mahshaaban/adiporeg_rna
Collect, process and quality control RNA-sequencing (RNA-Seq) data from differentiating 3T3-L1
Last synced: 11 Nov 2024
https://github.com/mahshaaban/segmenternote
A technical note to describe the segmenter package
chipseq chromatine-segmentation histone-modifications
Last synced: 11 Nov 2024
https://github.com/mahshaaban/dynamic_analysis
Dynamic analysis of zinc contribution to the structural stability of HDAC6 protein
dynamic-simulation-models hdac6 zinc
Last synced: 11 Nov 2024
https://github.com/mahshaaban/adiporeg
Transcription regulation networks in differentiating adipocytes
Last synced: 11 Nov 2024
https://github.com/mahshaaban/adiporeg_chip
Collect, process and quality control Chromatin Immunoprecipitation followed by sequencing (ChIP-Seq) data from differentiating 3T3-L1.
Last synced: 11 Nov 2024
https://github.com/mahshaaban/curatedadipochip
A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Last synced: 11 Nov 2024
https://github.com/mahshaaban/sqlome
Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
microrna r sqlite-database transcription-factors
Last synced: 11 Nov 2024
https://github.com/mahshaaban/target_talk
Code for "Integrating binding and expression data to predict transcription factors combined function" talk. KSBMB, Seoul, 2020
Last synced: 11 Nov 2024
https://github.com/mahshaaban/colocr_app
A shiny app for conducting co-localization analysis.
colocalization image-analysis shiny-apps
Last synced: 11 Nov 2024
https://github.com/mahshaaban/cregulomedb
Build the database file for cRegulome package
cancer-genomics databases datascience microrna r tcga-data transcription-factors
Last synced: 11 Nov 2024
https://github.com/mahshaaban/intro_meta_r
Introduction to meta analysis in R
Last synced: 11 Nov 2024
https://github.com/mahshaaban/curatedadipoarray
A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations
adipocyte-differentiation curated-data microarrays perturbations
Last synced: 11 Nov 2024
https://github.com/mahshaaban/chromatin_segmentation_r
Package demo slides, "Chromatin Segmentation Analysis in R"
chipseq chromatin-segmentation hmm
Last synced: 11 Nov 2024
https://github.com/mahshaaban/river_bod
Analysis of public data of river organic pollution in South Korea
Last synced: 11 Nov 2024
https://github.com/mahshaaban/curatedadiporna
A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Last synced: 11 Nov 2024
https://github.com/mahshaaban/latex_overleaf
An introduction to the basics of LaTeX using Overleaf
Last synced: 11 Nov 2024
https://github.com/mahshaaban/targetflow
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
chipseq r-package transcription-factors workflow
Last synced: 11 Nov 2024
https://github.com/mahshaaban/orlistat_meta_analysis
A training program for medical students on evaluating clinical evidence funded by the National Health Insurance Service in Korea
Last synced: 11 Nov 2024