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Projects in Awesome Lists by Multiomics-Analytics-Group

A curated list of projects in awesome lists by Multiomics-Analytics-Group .

https://github.com/multiomics-analytics-group/vuegen

VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.

data-visualization developer-tools python quarto reports streamlit

Last synced: 19 Mar 2025

https://github.com/multiomics-analytics-group/micw2graph

A knowledge graph of the wastewater treatment microbiome and its biological context

biolink-model knowledge-graph metagenomics network-biology streamlit-webapp wastewater-treatment

Last synced: 12 Apr 2025

https://github.com/multiomics-analytics-group/pubmed-rag

A playground for RAG development from pubmed API

Last synced: 12 Apr 2025

https://github.com/multiomics-analytics-group/nf-vuegen

nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

data-visualization developer-tools nextflow-modules nf-core quarto reports streamlit

Last synced: 12 Apr 2025

https://github.com/multiomics-analytics-group/abaco

Batch Effect Correction framework for metagenomic data

batch-correction bioinformatics-software metagenomics microbiome python

Last synced: 31 Aug 2025

https://github.com/multiomics-analytics-group/course_synthetic_biology_data

Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories

course education slides

Last synced: 11 Feb 2026

https://github.com/multiomics-analytics-group/vuecore

Visualization library for omics data

plotting visualization

Last synced: 12 Apr 2025

https://github.com/multiomics-analytics-group/streamlit_demo

Streamlit demo for the MONA group meeting on the 2nd of November 2025

Last synced: 13 Oct 2025

https://github.com/multiomics-analytics-group/fermentdb

FermentDB: A Database for High-cell Density Fermentations

Last synced: 23 Oct 2025

https://github.com/multiomics-analytics-group/airbiome_microb_asso_net_report

This repository contains a summary of the main results for the microbial association networks from the AirBiome project. The reports were generated using VueGen, a tool to automate the creation of scientific reports.

Last synced: 22 Feb 2026

https://github.com/multiomics-analytics-group/acore

Functionality to preprocess and analyse multi-omics data

analysis omics omics-data-integration preprocessing-data

Last synced: 23 Jan 2026

https://github.com/multiomics-analytics-group/airbiome

R and Python scripts to perform microbial network analysis of the AirBiome project, from data preprocessing to network comparisons and metadata correlations.

bioinformatics metagenomics-analysis network-analysis python r

Last synced: 07 May 2026

https://github.com/multiomics-analytics-group/retrieve_info_mgnifyapi

Scripts to get information from MGnify programmatically using its API

Last synced: 28 Jul 2025

https://github.com/multiomics-analytics-group/course_graph_machine_learning

This is part of an AI course

Last synced: 13 Jun 2025

https://github.com/multiomics-analytics-group/microbial_network_inference_and_analysis_micw2graph

A repository with scripts to infer and analyze microbial association networks for the MicW2Graph project

Last synced: 26 Mar 2025