Projects in Awesome Lists by adeschen
A curated list of projects in awesome lists by adeschen .
https://github.com/adeschen/similarpeak
Bioconductor Package - Metrics to estimate the level of similarity between two ChIP-Seq profiles
bioconductor bioconductor-package chip-profiles chip-seq metrics r
Last synced: 18 Mar 2025
https://github.com/adeschen/enrichviewnet
From functional enrichment results to biological networks
cystocape functional-enrichment network r-package
Last synced: 18 Mar 2025
https://github.com/adeschen/signatureheatmap
R package to create heatmaps using signature gene list and transcriptomic data
classification gene-list gene-signature heatmap heatmap-visualization r rna-seq-data
Last synced: 18 Mar 2025
https://github.com/adeschen/arcashlatools
Tools to easy the extraction and manipulation of HLA typing produced by arcasHLA software
Last synced: 18 Mar 2025
https://github.com/adeschen/consensusseeker
This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.
chip-seq-analysis genomic-data-analysis nucleosome-positioning r-package
Last synced: 18 Mar 2025
https://github.com/adeschen/subtypeorganizer
Subtype classification through multimodal distribution
Last synced: 18 Mar 2025
https://github.com/adeschen/mpileuptools
This python script parses a mpileup file to extract the coverage of each base at each position.
bioinformatics bioinformatics-scripts coverage mpileup parser position python27
Last synced: 18 Mar 2025
https://github.com/adeschen/nucleosimshiny
Interactive generation of nucleosomes maps using Shiny framework and based on Bioconductor nucleoSim package
Last synced: 18 Mar 2025
https://github.com/adeschen/pairedpermutationtest
R package to carry out permutation tests on paired observations
Last synced: 18 Mar 2025
https://github.com/adeschen/gettingandcleaningdata
Getting and Cleaning Data Project
Last synced: 18 Mar 2025
https://github.com/adeschen/machinelearningweightlifting
Qualitative Activity Recognition of Barbell Lifting Exercises
Last synced: 18 Mar 2025
https://github.com/adeschen/nucleosim
Bioconductor Package - Simulate synthetic nucleosome maps
Last synced: 18 Mar 2025
https://github.com/adeschen/docker-arcashla
Docker image for arcasHLA software
docker-image hla hla-database hla-typing
Last synced: 18 Mar 2025
https://github.com/adeschen/geneiase_tools
R scripts to process input/output related to GeneiASE software
allele-specific express geneiase r rna-seq rna-seq-analysis
Last synced: 18 Mar 2025
https://github.com/adeschen/methylinheritance
Bioconductor Package - Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
analysis bioconductor bioinformatics cpg differentially-methylated-elements inheritance monte-carlo-sampling permutation r
Last synced: 18 Mar 2025