https://github.com/algbio/ggcat

Compacted and colored de Bruijn graph construction and querying

bioinformatics bioinformatics-pipeline de-novo-assembly debruijn-graph genome-assembly rust sequencing

Last synced: 06 Feb 2026

https://github.com/algbio/themisto

Space-efficient pseudoalignment with a colored de Bruijn graph

Last synced: 06 Feb 2026

https://github.com/algbio/GraphChainer

An accurate aligner of long reads to a variation graph, based on co-linear chaining

long-reads pangenomics read-aligners variation-graph

Last synced: 10 May 2025

https://github.com/algbio/founderblockgraphs

Constructs segment repeat-free founder block graphs from multiple sequence alignments

Last synced: 06 Feb 2026

https://github.com/algbio/optimized-fd

Last synced: 06 Feb 2026