Projects in Awesome Lists by althonos
A curated list of projects in awesome lists by althonos .
https://github.com/althonos/instalooter
Another API-less Instagram pictures and videos downloader.
cross-platform downloader instagram instagram-scraper python
Last synced: 14 May 2025
https://github.com/althonos/InstaLooter
Another API-less Instagram pictures and videos downloader.
cross-platform downloader instagram instagram-scraper python
Last synced: 02 Apr 2025
https://github.com/althonos/ffpb
A progress bar for ffmpeg. Yay !
cli ffmpeg ffmpeg-command progress-bar python-script
Last synced: 08 Sep 2025
https://github.com/althonos/pronto
A Python frontend to (Open Biomedical) Ontologies.
bioinformatics obo obo-graphs obofoundry ontology owl parser python semantic-web
Last synced: 16 May 2025
https://github.com/althonos/pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd
Last synced: 09 Oct 2025
https://github.com/althonos/pyhmmer
Cython bindings and Python interface to HMMER3.
bioinformatics cython-library hidden-markov-model hmmer hmmer3 python-bindings python-library sequence-analysis
Last synced: 10 Sep 2025
https://github.com/althonos/fs.sshfs
Pyfilesystem2 over SSH using paramiko
filesystem filesystem-library paramiko pyfilesystem2 ssh
Last synced: 05 Apr 2025
https://github.com/althonos/peptides.py
Physicochemical properties, indices and descriptors for amino-acid sequences.
bioinformatics protein pure-python qsar-models sequence-analysis
Last synced: 10 Apr 2025
https://github.com/althonos/rich-msa
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
Last synced: 12 Sep 2025
https://github.com/althonos/mini3di
A NumPy port of the foldseek code for encoding protein structures to 3di.
foldseek numpy-library protein-structure python-library
Last synced: 09 Apr 2025
https://github.com/althonos/lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
bioinformatics genomics pssm rust-library sequence-analysis sequence-motif simd
Last synced: 04 Oct 2025
https://github.com/althonos/pyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
bioinformatics cython-library genomics multiple-sequence-alignment python-bindings python-library sequence-alignment
Last synced: 09 Apr 2025
https://github.com/althonos/pyorthoani
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
average-nucleotide-identity bioinformatics biopython orthoani python python-module
Last synced: 31 Aug 2025
https://github.com/althonos/fs.smbfs
Pyfilesystem2 over SMB using pysmb
cifs filesystem pyfilesystem2 pysmb smb
Last synced: 07 Sep 2025
https://github.com/althonos/pyskani
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
ani average-nucleotide-identity bioinformatics metagenomes python-bindings python-library taxonomy
Last synced: 31 Aug 2025
https://github.com/althonos/blanket
A simple Rust macro to derive blanket implementations for your traits.
derive proc-macro-attributes rust-macro rust-trait
Last synced: 07 Sep 2025
https://github.com/althonos/pyfastani
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
ani average-nucleotide-identity bioinformatics cython-library metagenomes python-bindings python-library taxonomy
Last synced: 02 Aug 2025
https://github.com/althonos/pytrimal
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
alignment-trimming bioinformatics cython-wrapper genomics multiple-sequence-alignment python python-interface python-library simd
Last synced: 23 Jun 2025
https://github.com/althonos/pymuscle5
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
bioinformatics cython-library genomics multiple-sequence-alignment muscle python-bindings python-library sequence-alignment
Last synced: 24 Oct 2025
https://github.com/althonos/gb-io.py
A Python interface to gb-io, a fast GenBank parser written in Rust.
Last synced: 04 Oct 2025
https://github.com/althonos/fs.archive
Pyfilesystem2 for various archive filesystems
7z archive iso library pyfilesystem2 python tar zip
Last synced: 07 Sep 2025
https://github.com/althonos/pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Last synced: 07 Sep 2025
https://github.com/althonos/pysylph
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
Last synced: 30 Dec 2025
https://github.com/althonos/iocursor
A zero-copy file-like wrapper for Python byte buffers, inspired by Rust's std::io::Cursor.
buffer file-like python python-c-extension python-extension sans-io zero-copy
Last synced: 07 Sep 2025
https://github.com/althonos/pymemesuite
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
bioinformatics cython-library genomics meme-suite sequence-analysis sequence-motif
Last synced: 21 Mar 2025
https://github.com/althonos/cksfv.rs
A 10x faster drop-in reimplementation of cksfv using Rust and the crc32fast crate.
Last synced: 07 Sep 2025
https://github.com/althonos/textwrap-macros
Simple procedural macros to use textwrap utilities at compile time.
Last synced: 12 Sep 2025
https://github.com/althonos/moclo
Modular cloning simulation with the MoClo framework in Python
bioinformatics biopython moclo modular-cloning plasmids system-biology
Last synced: 07 Sep 2025
https://github.com/althonos/thunar-torrent-property
A small thunar extension displaying the metadata in a torrent file.
gtk2 gtk3 libtorrent thunar thunarx torrent
Last synced: 13 May 2025
https://github.com/althonos/pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
bioinformatics cython-library cython-wrapper genomics needleman-wunsch python-bindings python-library sequence-alignment simd smith-waterman
Last synced: 07 Sep 2025
https://github.com/althonos/jinja2-fsloader
A Jinja2 template loader using PyFilesystem2.
jinja2 jinja2-extension loader pyfilesystem2 python-library template-engine
Last synced: 12 Jul 2025
https://github.com/althonos/uniprot.rs
Rust data structures and parser for the Uniprot database(s).
bioinformatics rust-library swissprot uniprot uniprotkb uniref
Last synced: 12 Sep 2025
https://github.com/althonos/scoring-matrices
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
Last synced: 07 Sep 2025
https://github.com/althonos/pubchem.rs
Rust data structures and client for the PubChem REST API
api-client bioinformatics cheminformatics pubchem rust-library
Last synced: 11 Apr 2025
https://github.com/althonos/scihub-pubmed-userscript
A GreaseMonkey userscript to add a Full Text Link button redirecting to Sci-Hub on PubMed article pages.
badge greasemonkey pubmed-article-pages sci-hub userscript
Last synced: 11 Apr 2025
https://github.com/althonos/pyjess
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.
bioinformatics catalytic-site cython-wrapper enzyme pdb protein-structure python python-interface python-library
Last synced: 11 Apr 2025
https://github.com/althonos/nanoset.py
A memory-optimized wrapper for Python sets likely to be empty.
memory-allocation python-library rust-ffi wrapper
Last synced: 11 Apr 2025
https://github.com/althonos/pyncbitk
Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).
bioinformatics blast cython-library python-bindings python-library sequence-analysis
Last synced: 30 Dec 2025
https://github.com/althonos/torch-treecrf
A PyTorch implementation of Tree-structured Conditional Random Fields.
conditional-random-fields machine-learning python-library pytorch torch
Last synced: 08 Oct 2025
https://github.com/althonos/nafcodec
Rust coder/decoder for Nucleotide Archival Format (NAF) files.
bioinformatics naf nom-parser nucleotide-sequences rust-library
Last synced: 07 Sep 2025
https://github.com/althonos/pyswrd
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.
Last synced: 20 Mar 2025
https://github.com/althonos/pruefung
Redundancy checks in pure Rust
adler-32 checksum crates crc-32 crc-32c fletcher-16 fnv rust
Last synced: 07 Sep 2025
https://github.com/althonos/flips.rs
Rust bindings to Flips, the Floating IPS patcher.
bps ips patcher rom rust-bindings rust-ffi
Last synced: 19 Jun 2025
https://github.com/althonos/opticaldisc
Read optical media filesystems with Rust
iso-image iso9660 parser rust-crate
Last synced: 11 Oct 2025
https://github.com/althonos/diced
A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.
bioinformatics crispr genomics python-bindings python-library rust-library
Last synced: 02 Aug 2025
https://github.com/althonos/proteinogenic
Chemical structure generation for protein sequences as SMILES string.
bioinformatics chemical-structure protein-sequences rust-library smiles
Last synced: 07 Oct 2025
https://github.com/althonos/lapucelle-textures
A PPSSPP texture pack for La Pucelle Ragnarok (english patched)
disgaea font-replacement lapucelle nippon-ichi ppsspp textures
Last synced: 03 Jan 2026
https://github.com/althonos/kmachine
A toy compiler that produces Kappa code from Counter Machine instructions.
bioinformatics compiler kappa-language modeling-dynamic-systems rust turing-machine-simulator
Last synced: 04 Oct 2025
https://github.com/althonos/pyaragorn
Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.
aragorn bioinformatics gene-finding genome mtrna python python-library rna tmrna trna
Last synced: 25 Jul 2025
https://github.com/althonos/embedded-picofont
The PICO-8 font to use with embedded-graphics.
embedded embedded-rust font graphics no-std pico-8 rust
Last synced: 11 Apr 2025
https://github.com/althonos/pytantan
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
bioinformatics cython-library cython-wrapper dna-repeats genomics python-bindings python-library simd
Last synced: 11 Apr 2025
https://github.com/althonos/rlinalg
Linear Algebra routines for Python as implemented in the R language.
linear-algebra python-library scientific-computing scipy
Last synced: 14 Nov 2025
https://github.com/althonos/smatrix
Not the slurm job dispatcher you need, but the one you deserve.
cli-app python slurm slurm-cluster
Last synced: 20 Mar 2025
https://github.com/althonos/obofoundry.rs
Structures to deserialize OBO Foundry listings into.
berkeley-bop obo obofoundry rust serde
Last synced: 24 Aug 2025
https://github.com/althonos/botrytis
A minimal webapp to display Botrytis cinerea sequencing data using CherryPy, Jinja2 and Bootstrap
bioinformatics bootstrap cherrypy genomics genomics-visualization jinja2
Last synced: 20 Mar 2025
https://github.com/althonos/elabackup
Quick and dirty CLI app to backup an eLabFTW instance using the HTTP API
Last synced: 20 Mar 2025
https://github.com/althonos/animelogos
Some anime logos I remade myself in vector graphics
anime assets fanarttv logos vector-graphics
Last synced: 20 Mar 2025
https://github.com/althonos/config.fish
My own configuration files for the fish shell
dotfiles fish-configuration fish-shell
Last synced: 16 Aug 2025