Projects in Awesome Lists by aphp
A curated list of projects in awesome lists by aphp .
https://github.com/aphp/edsnlp
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
clinical-data-warehouse deep-learning fast french medical multi-task nlp pytorch rule-based spacy text-mining
Last synced: 15 May 2025
https://github.com/aphp/Cohort360-FrontEnd
A web application to find patients, build cohorts and visualize health records
clinical-data cohort-analysis cohort-data cohort-selection cohort-studies cohorts data-visualization fhir fhir-api find-patients medical medtech omop omop-cdm query visualize-data
Last synced: 21 Jan 2026
https://github.com/aphp/eds-pseudo
EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
Last synced: 17 Jul 2025
https://github.com/aphp/edspdf
EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-learning-based approaches to classify text blocs between body and meta-data.
extraction machine-learning pdf
Last synced: 24 Oct 2025
https://github.com/aphp/cohort360-frontend
A web application to find patients, build cohorts and visualize health records
clinical-data cohort-analysis cohort-data cohort-selection cohort-studies cohorts data-visualization fhir fhir-api find-patients medical medtech omop omop-cdm query visualize-data
Last synced: 18 Aug 2025
https://github.com/aphp/eds-scikit
eds-scikit is a Python library providing tools to process and analyse OMOP data
clinical-data-warehouse data-science medical omop python
Last synced: 12 Apr 2025
https://github.com/aphp/spark-etl
Better bridge apache spark and postgresql
Last synced: 17 Jun 2025
https://github.com/aphp/py-hdfs-mount
Mount HDFS with fuse, works with kerberos!
fuse hadoop hdfs kerberos mount mount-hdfs
Last synced: 18 Jul 2025
https://github.com/aphp/heemod
Markov Models for Health Economic Evaluations
Last synced: 12 Apr 2025
https://github.com/aphp/edsteva
EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records.
Last synced: 01 Jul 2025
https://github.com/aphp/confit
Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, minimal configuration files and a robust CLI.
cli configuration interpolation python registry validation
Last synced: 12 Dec 2025
https://github.com/aphp/foldedtensor
PyTorch extension for handling deeply nested sequences of variable length
Last synced: 12 Apr 2025
https://github.com/aphp/uimaonspark
Way to run Uima Pipelines on Apache Spark
Last synced: 18 Jul 2025
https://github.com/aphp/sphere
A research PACS Solution adapted to Big Data Plateform
Last synced: 13 Feb 2026
https://github.com/aphp/dsfaker
Time series Generator
data faker generation time-series
Last synced: 18 Jun 2025
https://github.com/aphp/cohort360-back-end
Backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Cohort360-AdministrationPortal
administration api cohort portal
Last synced: 12 Apr 2025
https://github.com/aphp/rgho
:globe_with_meridians:Access WHO Global Health Observatory Data From R
Last synced: 12 Apr 2025
https://github.com/aphp/edstuto
A variety of tutorials introducing some issues related to the analysis of health real world data available for researchers in clinical data warehouses.
Last synced: 12 Apr 2025
https://github.com/aphp/uima-aphp
A set of module for multiple NLP pipelines
Last synced: 18 Jul 2025
https://github.com/aphp/formbuilder
The AP-HP FormBuilder allows building (creating and editing) forms in FHIR - R4 format (Questionnaire). It is based on the NLM FormBuilder, an open-source project developed by the Lister Hill National Center for Biomedical Communication (LHNCBC).
Last synced: 06 Sep 2025
https://github.com/aphp/prism-lang-fml
A Prism.js language definition plugin for FHIR Mapping Language (FML)
Last synced: 05 Oct 2025
https://github.com/aphp/kerberos-kinit
This is a simple docker image continuously refreshing a krb5 ticket cache. It is intended to be used in K8S as a side-car runing in a pod needing such authentication mechanism.
Last synced: 13 Jan 2026
https://github.com/aphp/jupyter-eds-notebooks
jupyter-eds-notebooks provides Docker images with preconfigured Jupyter environments for clinical and health data analysis, tailored for AP‑HP Datalabs and the HELIX platform.
data-analysis data-science data-visualization healthcare lab
Last synced: 13 Jan 2026