Projects in Awesome Lists by aplbrain
A curated list of projects in awesome lists by aplbrain .
https://github.com/aplbrain/grand-cypher
Implementation of the Cypher language for searching NetworkX graphs
cypher grand graph graph-database neo4j networks networkx python
Last synced: 12 Oct 2025
https://github.com/aplbrain/grand
Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
aplbrain dynamodb grand grand-graph graph graph-algorithms graph-database graph-library graph-theory graphs gremlin igraph neptune network-analysis networkit networkx serverless sql
Last synced: 04 Apr 2025
https://github.com/aplbrain/npyjs
Read numpy .npy files in JavaScript
3d javascript jhuapl nodejs npy npy-files numpy
Last synced: 06 Apr 2025
https://github.com/aplbrain/dotmotif
A performant, powerful query framework to search for network motifs
aplbrain bossdb connectome connectomics dotmotif graph graph-database graph-matching motif-discovery motifs neo4j networkx python query-language subgraph-isomorphism vf2
Last synced: 17 Mar 2025
https://github.com/aplbrain/grandiso-networkx
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
algorithm aplbrain bossdb connectomics dotmotif grand-graphs grand-iso graphs network network-analysis network-biology subgraph-isomorphism ullman vf2
Last synced: 31 Oct 2025
https://github.com/aplbrain/tamarind
manage multiple ephemeral neo4j containers
database docker graph graph-database neo4j neo4j-database
Last synced: 24 Oct 2025
https://github.com/aplbrain/pytri
Python wrapper for Substrate
jhuapl jupyter-notebook pytri substrate threejs
Last synced: 25 Oct 2025
https://github.com/aplbrain/colocar
tools for sparse human annotation of three-dimensional [neuroscience] datasets
bossdb ground-truth jhuapl neuroscience sparse-annotations web-application
Last synced: 01 Apr 2026
https://github.com/aplbrain/mesh-deco
A Python-based utility for distributed meshing.
apl aws-lambda boss jhu jhuapl johns-hopkins-university serverless worker-nodes
Last synced: 15 Aug 2025
https://github.com/aplbrain/neuvue-manage
Resources and documentation to create and manage proofreading tasks on NeuVue
Last synced: 09 Feb 2026
https://github.com/aplbrain/bossypaints
Web-based dense annotation tool for connectomics
Last synced: 17 Jan 2026
https://github.com/aplbrain/gordium
A tool for untangling the mysteries of large-scale graphs.
Last synced: 21 Jul 2025
https://github.com/aplbrain/benchmark-metadata
Metadata specification and upload instructions for BossDB images, experiments, and annotations
Last synced: 19 Mar 2026
https://github.com/aplbrain/bossphorus-python
bossphorus is a simple volumetric datastore for dense 3D data.
3d bossdb dense-3d-data docker jhuapl neuroscience volume
Last synced: 18 Aug 2025
https://github.com/aplbrain/motif2cypher
A command-line executable to convert DotMotif syntax to Cypher (for use with Neo4j)
Last synced: 06 Jul 2025
https://github.com/aplbrain/grandlite
A SQLite-like tool for querying graphs from the command-line using graph query languages in in-memory Python.
aplbrain command-line cypher dotmotif grand-graph graph graph-database graph-query graphs in-memory neo4j opencypher sqlite
Last synced: 11 May 2026
https://github.com/aplbrain/bossdb-collab-notebooks
Collection of public notebooks for all projects on BossDB
Last synced: 15 Mar 2025
https://github.com/aplbrain/bossphorus
A BossDB-like volumetric datastore in Rust
3d bossdb rust volumetric-data
Last synced: 15 Mar 2025
https://github.com/aplbrain/bossdb-rag-chatbot
A Language Interface to the BossDB Ecosystem
Last synced: 11 Jun 2025
https://github.com/aplbrain/motifstudio
bossdb grand-graphs grandiso motifs subgraph-isomorphism
Last synced: 09 Oct 2025
https://github.com/aplbrain/rhn
Code for the paper Improving Echo State Network Performance with Biologically-Inspired Hierarchical Network Structure
Last synced: 19 Mar 2026
https://github.com/aplbrain/ml_evaluation
MICrONS - Machine Learning Demonstration Task Evaluation Repository
Last synced: 15 Mar 2025
https://github.com/aplbrain/blast-tools
Repository for BLAST Simulation tools
Last synced: 02 Aug 2025
https://github.com/aplbrain/bedrock
The Docker base image that's solid as a rock
Last synced: 15 Mar 2025
https://github.com/aplbrain/mb_point_attractor
Code supporting paper "Recurrent connections enable point attractor dynamics and dimensionality reduction in a connectome-constrained model of the insect learning center"
Last synced: 02 Jan 2026
https://github.com/aplbrain/colocart
Easy static-site build and deployment to AWS s3.
Last synced: 14 Oct 2025
https://github.com/aplbrain/neurodatarehack2023
APL Team's project for NeurodataRehack 2023 event hosted by NWB
Last synced: 30 Oct 2025
https://github.com/aplbrain/ember-dandi-access-summaries
Summaries of access stats (full downloads & streaming) for each EMBER-Dandiset on the EMBER archive.
Last synced: 17 Jan 2026
https://github.com/aplbrain/reconstruct2stack
A Python library to convert Reconstruct or PyReconstruct segmentation contours to image mask stacks.
Last synced: 22 Aug 2025
https://github.com/aplbrain/vsvi2precomputed
Script to convert VSVI (used in VAST) image datasets to precomputed volumes
Last synced: 03 Jul 2025
https://github.com/aplbrain/campfire
Complementary Automated Methods for Proofreading
Last synced: 30 Aug 2025
https://github.com/aplbrain/seismic
State Estimation/Integration of Sensors from a Miniature Insect Connectome
Last synced: 15 Mar 2025
https://github.com/aplbrain/substrate-demos
Demo projects for the open-source Substrate visualization scaffold
demo jhuapl pytri substrate substrate-demos webpack
Last synced: 04 Oct 2025
https://github.com/aplbrain/pyreconstruct-download
Tiny website + example code for downloading a subvolume for annotation in PyReconstruct
Last synced: 15 Mar 2025
https://github.com/aplbrain/neuroworkflows-demo
INCF Assembly 2023 Demonstration of Neuroworkflows
Last synced: 15 Mar 2025
https://github.com/aplbrain/neuroglancer-segment-properties
This application integrates with Neuroglancer via the CAVEclient library to manage neuroimaging data, allowing users to create, view, and manipulate segment properties in its 3D environment.
Last synced: 15 Mar 2025
https://github.com/aplbrain/osc-data-processing
One-Shot Counting - Data Processing repository
Last synced: 09 Jul 2025