Projects in Awesome Lists by aryarm
A curated list of projects in awesome lists by aryarm .
https://github.com/aryarm/varca
Use an ensemble of variant callers to call variants from ATAC-seq data
atac-seq-data machine-learning random-forest snakemake variant-calling
Last synced: 11 Apr 2025
https://github.com/aryarm/as_analysis
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
allele-specific-expression atac-seq rna-seq snakemake whole-genome-sequencing
Last synced: 11 Apr 2025
https://github.com/aryarm/hmcbbq
Automate BBQ request submission to the Harvey Mudd Dining Hall
Last synced: 23 Feb 2025
https://github.com/aryarm/species-gene-coexp
A cross-species gene coexpression analysis in cerebral cortical tissue
Last synced: 23 Feb 2025
https://github.com/aryarm/varbench
Benchmarking variant callers for long read data
benchmarking genotyping long-read-sequencing snakemake
Last synced: 23 Feb 2025
https://github.com/aryarm/str_ase
Allele-specific expression (ASE) for short tandem repeats (STRs)
allele-specific-expression linear-regression short-tandem-repeats snakemake
Last synced: 23 Feb 2025
https://github.com/aryarm/aryarm-conda
Scripts, recipes, and docs for conda packages
Last synced: 23 Feb 2025
https://github.com/aryarm/transit
An accumulation of transit-related project information for the SoCal region
public-transportation schedule southern-california
Last synced: 23 Feb 2025
https://github.com/aryarm/demo-docker-action
A demonstration of using GitHub actions to build and push reproducible, conda-based Docker containers with best practices
Last synced: 23 Feb 2025
https://github.com/aryarm/motif_check
Evaluate de novo motif finding tools
benchmarking motif-discovery pipeline snakemake
Last synced: 23 Feb 2025
https://github.com/aryarm/sc_rats
Analyzing single cell ATAC data from the brains of drugged rats
neuroscience rattus-norvegicus single-cell-atac-seq
Last synced: 23 Feb 2025