https://github.com/bigdatagenomics/adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

avro big-data bioinformatics genomics java parquet python r scala spark

Last synced: 19 Oct 2025

https://github.com/bigdatagenomics/mango

A scalable genome browser. Apache 2 licensed.

Last synced: 17 Mar 2025

https://github.com/bigdatagenomics/avocado

A Variant Caller, Distributed. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/cannoli

Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

Last synced: 09 Apr 2025

https://github.com/bigdatagenomics/bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

Last synced: 08 Apr 2025

https://github.com/bigdatagenomics/eggo

Ready-to-go Parquet-formatted public 'omics datasets

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/rice

An RNA pipeline built on top of ADAM. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/utils

General utility code used across BDG products. Apache 2 licensed.

Last synced: 16 May 2025

https://github.com/bigdatagenomics/bigdatagenomics.github.io

Web Site for the Big Data Genomics Group

Last synced: 09 Apr 2025

https://github.com/bigdatagenomics/gnocchi

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/lime

Distributed Set Theory for Genomics

Last synced: 19 Jun 2025

https://github.com/bigdatagenomics/workflows

Toil workflows for bigdatagenomics tools. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/bdg-services

Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/recipes

Recipes using BDG projects. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/pacmin

Assembler for PacBio reads. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/quinine

A refreshing treatment for all quality control ailments. Apache 2 licensed.

Last synced: 06 Apr 2025

https://github.com/bigdatagenomics/toil-wdl-api

Exemplar API that mediates Toil with a WDL front-end and workflow tracking.

Last synced: 09 Apr 2025

https://github.com/bigdatagenomics/jenkins-docker

Last synced: 09 Apr 2025

https://github.com/bigdatagenomics/corretto

Read error correction utilities.

Last synced: 18 Jul 2025

https://github.com/bigdatagenomics/convert

Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.

Last synced: 06 Apr 2025