https://github.com/chasewnelson/snpgenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

diversity-measurement dnds dnds-estimation evolution evolutionary-parameters fasta-sequences molecular-evolution natural-selection nei-gojobori next-generation-sequencing nucleotide nucleotide-diversity perl population-genetics sequence-analysis snp-report substitution-rate vcf vcf-files

Last synced: 23 Mar 2025

https://github.com/chasewnelson/OLGenie

Program for estimating dN/dS in overlapping genes (OLGs)

dnds dnds-estimation molecular-evolution natural-selection nei-gojobori neutral-evolution overlapping overlapping-genes perl positive-selection purifying-selection selection

Last synced: 23 Mar 2025

https://github.com/chasewnelson/VCFgenie

Script to dynamically process within-sample variants in a VCF file by implementing arbitrary filtering rules and controlling for a false-discovery rate

Last synced: 23 Mar 2025