https://github.com/chenyangkang/stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

adaptive-spatio-temporal-exploratory-model animal animal-movement big-data biodiversity biogeography bird-migration bird-survey ebird ecology ecology-modelling geospatial machine-learning movement movement-ecology ornithology spatio-temporal-analysis spatiotemporal spatiotemporal-dynamics species-distribution-modeling

Last synced: 19 Apr 2025

https://github.com/chenyangkang/fasta2codeml

A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.

codeml ecology molecular-evolution natural-selection paml selection

Last synced: 08 May 2025

https://github.com/chenyangkang/bird_phylogeny

Bird (avian) phylogenetic tree with bird pictures

avian biodiversity bird ecology evolution phylogenetic-tree phylogeny

Last synced: 08 May 2025

https://github.com/chenyangkang/envarray

Efficient daily environmental data processing and annotation with Xarray and netCDF for ecology project

Last synced: 08 May 2025

https://github.com/chenyangkang/mads_milestone2_bird_migration

Last synced: 08 May 2025

https://github.com/chenyangkang/pooledpsmc

Auto-PSMC with pooled individuals

Last synced: 08 May 2025

https://github.com/chenyangkang/aleomph

Anthropogenic land use effect on bird migration phenology

Last synced: 08 May 2025

https://github.com/chenyangkang/slurm_vscode_uiuc

A brief instruction on how to access compute node on slurm using VScode (to run apps, including jupyter notebook) at UIUC illnois campus cluster (ICC)

illinois jupyter-notebook slurm slurm-cluster slurm-job u-of-i uiuc vscode

Last synced: 08 May 2025

https://github.com/chenyangkang/ziying_result

chicken must die

Last synced: 08 May 2025

https://github.com/chenyangkang/visualizing_bird_migration_ebird

Last synced: 08 May 2025

https://github.com/chenyangkang/bimig

Bayesian Inference of Migration Phenology and Confounding Effect

Last synced: 08 May 2025

https://github.com/chenyangkang/ngs_script

Last synced: 08 May 2025

https://github.com/chenyangkang/pop_pipeline

Last synced: 08 May 2025

https://github.com/chenyangkang/b10k

Last synced: 08 May 2025

https://github.com/chenyangkang/gwas_pig_project-

Last synced: 08 May 2025

https://github.com/chenyangkang/aleomph_server

Aleomph on server repo

Last synced: 08 May 2025

https://github.com/chenyangkang/occupancy_nn

Machine learning based species occupancy-detection model for prediction problem

animal-ecology citizen-science data-science ecology imperfect-detection occupancy-detection population-ecology species-distribution-modelling wildlife

Last synced: 08 May 2025

https://github.com/chenyangkang/my_comparative_genomics_toolkits

Last synced: 08 May 2025