https://github.com/complextissue/pytximport

Feature-rich Python implementation of the tximport package for gene count estimation.

anndata bioinformatics deseq2 python rna rna-seq scverse tximport

Last synced: 25 Feb 2026

https://github.com/complextissue/spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

image-analysis multiplexed-imaging pathology pathoplex scverse spatial-proteomics spatial-statistics

Last synced: 05 Mar 2026

https://github.com/complextissue/pyclustree

A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.

clustree pyclustree scverse single-cell

Last synced: 25 Feb 2026

https://github.com/complextissue/snakemake-bulk-rna-seq-workflow

Snakemake workflow for bulk RNA sequencing with pytximport.

Last synced: 25 Feb 2026

https://github.com/complextissue/.github

Last synced: 25 Feb 2026