https://github.com/cytomining/pycytominer

Python package for processing image-based profiling data

carpenter-lab cellprofiler cytominer image-processing microscopy morphological-profiling python way-lab

Last synced: 07 Jan 2026

https://github.com/cytomining/cytominer-database

[DEPRECATED] A package for storing morphological profiling data.

database microscopy profiling

Last synced: 11 Jun 2025

https://github.com/cytomining/cosmicqc

Single cell Morphology Quality Control (coSMicQC)

image-based-profiling microscopy-image-analysis quality-control

Last synced: 11 Mar 2026

https://github.com/cytomining/profiling-recipe

Image-based Profiling Recipe

Last synced: 20 Jun 2025

https://github.com/cytomining/cytodataframe

An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

dataframes image-analysis image-based-profiling single-cell

Last synced: 14 Jun 2025

https://github.com/cytomining/.github

A special GitHub repository for setting the Cytomining organization profile and default community health files.

Last synced: 03 Feb 2026

https://github.com/cytomining/cytominergallery

[Deprecated] A Gallery of Cytominer Vignettes

microscopy profiling vignette

Last synced: 05 Sep 2025

https://github.com/cytomining/cytomining.github.io

Cytomining organization GitHub Pages configuration.

Last synced: 26 Jan 2026

https://github.com/cytomining/profiling-template

Image-based Profiling Template

Last synced: 20 Jan 2026

https://github.com/cytomining/cytotable-benchmarks

Benchmarks for CytoTable and related.

Last synced: 17 Jun 2025