https://github.com/davidbhr/compactionanalyzer

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

cell-mechanics collagen contractility ecm fibers fibrosis image-processing imaging mechanobiology microscopy orientation tfm traction-force-microscopy

Last synced: 24 Jun 2025

https://github.com/davidbhr/CompactionAnalyzer

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

bioinformatics biophysics cell cell-mechanics collagen compaction contractility fiber fibrosis image-processing imaging microscopy orientation structure tissue-analysis

Last synced: 07 May 2025

https://github.com/davidbhr/arnold

Python package to analyze cell forces using 3D Traction Force Microscopy assuming simple geometries

Last synced: 16 Mar 2025