https://github.com/drisso/bioc2016singlecell

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

Last synced: 03 Mar 2026

https://github.com/drisso/singlecellexperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

bioconductor bioconductor-package human-cell-atlas single-cell-rna-seq

Last synced: 06 Apr 2025

https://github.com/drisso/zinbwave

Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave

Last synced: 07 Sep 2025

https://github.com/drisso/ruvseq

Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the official development version.

Last synced: 07 Sep 2025

https://github.com/drisso/learn2count

Structure learning based for zero-inflated negative binomial data

Last synced: 07 Sep 2025

https://github.com/drisso/zinb_analysis

Data analysis and simulations for the ZINB-WaVE paper

Last synced: 07 Sep 2025

https://github.com/drisso/mbkmeans

K-means clustering for large single-cell datasets

clustering human-cell-atlas

Last synced: 07 Sep 2025

https://github.com/drisso/thrivinginbioinformatics

Last synced: 15 Jun 2025

https://github.com/drisso/peixoto2015_tutorial

Tutorial to reproduce the analysis of Peixoto et al. (2015)

Last synced: 26 Feb 2025

https://github.com/drisso/rnaseq_meetup

Last synced: 03 Mar 2026

https://github.com/drisso/archive-ruvseq

Archived version of RUVSeq

gene-expression normalization r rna-seq statistical-models

Last synced: 07 Sep 2025

https://github.com/drisso/archive-singlecellexperiment

This is the archived version of SingleCellExperiment with the history before Bioc submission.

Last synced: 07 Sep 2025

https://github.com/drisso/archive-zinbwave

Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwave

gene-expression r rna-seq single-cell single-cell-genomics statistical-models

Last synced: 07 Sep 2025

https://github.com/drisso/edaseq

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

Last synced: 07 Sep 2025

https://github.com/drisso/archive-scrnaseq

Archived version of the scRNAseq Bioconductor package. All future development will be done at https://github.com/LTLA/scRNAseq

Last synced: 07 Sep 2025

https://github.com/drisso/bioc2019singlecell

Last synced: 19 Mar 2026

https://github.com/drisso/x94

Code and data to reproduce the analysis of Naka et al.

Last synced: 03 Mar 2026

https://github.com/drisso/awst

Asymmetric Winsorization per Sample Transformation

Last synced: 07 Sep 2025

https://github.com/drisso/awst_analysis

Code to reproduce the analyses of the AWST paper

Last synced: 03 Feb 2026

https://github.com/drisso/compgen_berlin2016

Last synced: 02 Mar 2026

https://github.com/drisso/structure_learning

Code to reproduce the analyses of Hue Nguyen et al. (2020)

Last synced: 19 Mar 2026

https://github.com/drisso/archive-edaseq

Archived version of EDASeq

Last synced: 26 Feb 2025

https://github.com/drisso/deconsgl

Deconvolution of RNA-Seq Via Sparse Group Lasso

Last synced: 26 Feb 2025

https://github.com/drisso/reproducible_research

Topics on reproducible research

Last synced: 05 Feb 2026

https://github.com/drisso/canazei

Slides for 2018 Winter School

Last synced: 04 Mar 2026

https://github.com/drisso/yeastrnaseqrisso2011

Gene-level counts of RNA-Seq data from a yeast transcriptome experiment

Last synced: 02 Feb 2026

https://github.com/drisso/rgpu

Repository to experiment with GPU computations in R

Last synced: 02 Jan 2026

https://github.com/drisso/scalablepca

testing

Last synced: 14 Mar 2025

https://github.com/drisso/rmdtemplates

R markdown templates that I find useful

Last synced: 03 Feb 2026

https://github.com/drisso/filtergenes

Last synced: 11 Feb 2026

https://github.com/drisso/prova

Last synced: 19 Feb 2026

https://github.com/drisso/striatum

Analysis of DAT cells

Last synced: 03 Mar 2026

https://github.com/drisso/czi_demo

CZI demo: Large-scale clustering in Bioconductor

Last synced: 13 Jun 2025

https://github.com/drisso/ridge

Last synced: 26 Feb 2025

https://github.com/drisso/proteomics_course

Last synced: 26 Feb 2025

https://github.com/drisso/filtering

Last synced: 26 Feb 2025

https://github.com/drisso/minibiocworkshop

A mini-workshop for debugging purposes

Last synced: 01 Mar 2026

https://github.com/drisso/asda

Website for the Advanced Statistics and Data Analysis course

Last synced: 26 Mar 2025

https://github.com/drisso/myfilter

This is an example package for the d-bug tutorial

Last synced: 07 Jul 2025

https://github.com/drisso/fastpca

Last synced: 14 Oct 2025

https://github.com/drisso/iscb.course

Bioconductor course at ISCB44

bioconductor iscb

Last synced: 03 Mar 2026

https://github.com/drisso/renku-project-template

Custom project template for Renku that uses Bioconductor docker images

Last synced: 01 Mar 2026

https://github.com/drisso/fletcher2017data

Data from the Fletcher et al (2017) paper in SingleCellExperiment format

Last synced: 19 Mar 2026

https://github.com/drisso/my_workshop

Last synced: 01 Mar 2026