Projects in Awesome Lists by drostlab
A curated list of projects in awesome lists by drostlab .
https://github.com/drostlab/philentropy
Information Theory and Distance Quantification with R
distance-measures distance-quantification information-theory jensen-shannon-divergence parametric-distributions r similarity-measures statistics
Last synced: 08 Apr 2026
https://github.com/drostlab/orthologr
Genome wide orthology inference and dNdS estimation
biomartr blast blast-searches codon-alignment comparative comparative-genomics comparative-genomics-studies comparing-genomes dnds-estimation entire-genomes genomics genomics-studies orthologous-genes orthology-inference proteome r retrieve-genomes sequence-alignment sequence-alignments species
Last synced: 17 Dec 2025
https://github.com/drostlab/ltrpred
De novo annotation of young retrotransposons
diversification evolution genome ltr ltr-retrotransposons ltr-transposons pipeline
Last synced: 30 Oct 2025
https://github.com/drostlab/mytai
Evolutionary Transcriptomics with R
biological-processes conservation evo-devo evolution evolutionary-transcriptomics expression-profiles gene-expression gene-sets mytai r studies-transcriptomes transcriptome
Last synced: 05 Apr 2025
https://github.com/drostlab/metablastr
Seamless Integration of BLAST Sequence Searches in R
biological-sequences biomartr blast blast-hits blast-search blast-searches blasting blastn nucleotide protein sequence-diversity species
Last synced: 01 May 2025
https://github.com/drostlab/published_phylomaps
A Collection of Published Phylostratigraphic Maps and Divergence Maps
Last synced: 18 Feb 2026
https://github.com/drostlab/rdiamond
Running DIAMOND2 through R
aligner diamond sequence sequence-alignment
Last synced: 01 Mar 2026
https://github.com/drostlab/retrocombinator
An R/C++ package for simulating the evolution of retrotransposons over time.
evolution recombination retrotransposons speciation transposable-element transposition transposons
Last synced: 04 Mar 2026
https://github.com/drostlab/edgynode
Statistical assessment and simulated evolution of gene regulatory networks
Last synced: 01 May 2025
https://github.com/drostlab/network-inference-pipeline
Applying network-inference-toolbox to RNAseq data
Last synced: 05 Sep 2025
https://github.com/drostlab/seqstats
Biological Sequence Statistics in R
bioinformatics biological-data-analysis biological-sequence-statistics biological-sequences genomics
Last synced: 23 Nov 2025
https://github.com/drostlab/patternseqr
Sequence feature detection and classification with R
Last synced: 28 Feb 2025
https://github.com/drostlab/network-inference-toolbox
A bunch of network inference utilities packaged as Singularity containers
Last synced: 28 Jul 2025
https://github.com/drostlab/homologr
Homology inference across multiple species
Last synced: 31 May 2026
https://github.com/drostlab/deepclust_colabfold
Using the DeepClust Database with ColabFold
Last synced: 28 Feb 2025
https://github.com/drostlab/deepclust_dataretrieval
Cluster Extraction for the DeepClust Database
Last synced: 28 Feb 2025
https://github.com/drostlab/setga
Small library extracting a minimal subset from a given set that optimizes a given (set of) function(s).
Last synced: 28 Feb 2025
https://github.com/drostlab/biodbretrievr
Retrieve and efficiently index entire biological sequence databases
biological-data biological-sequences data databasestoring retrieval
Last synced: 26 Feb 2026
https://github.com/drostlab/hitparsr
Distributed Databasing of Alignment Hit Data
distributed-database distributed-file-system distributed-storage
Last synced: 05 Mar 2026
https://github.com/drostlab/uberblast
Seamless Integration of BLAST Alignments in R
Last synced: 05 Mar 2026