Projects in Awesome Lists by earmingol
A curated list of projects in awesome lists by earmingol .
https://github.com/earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
bioinformatics bulk-rna-seq cell-cell-communication cell-cell-interaction computational-biology machine-learning rna-seq rnaseq sc-rna-seq single-cell single-cell-rna-seq
Last synced: 14 Aug 2025
https://github.com/earmingol/sccellfie
scCellFie offers advanced analysis of metabolic functions from single-cell and spatial transcriptomics. Efficient and user-friendly, it runs on Python and integrates with Scanpy, enabling single-cell and spatial analysis of metabolic tasks.
metabolic-modeling metabolic-pathways metabolism single-cell single-cell-transcriptomics spatial-transcriptomics systems-biology
Last synced: 13 Apr 2025
https://github.com/earmingol/sars-human-derank
PageRank-based search of important human genes for viral infection
Last synced: 02 Mar 2026
https://github.com/earmingol/singlecell-ccc
Docker image for running cell-cell communication analyses
Last synced: 05 Jan 2026
https://github.com/earmingol/guitar
Codes for helping to learn playing guitar
guitar guitar-pro guitar-tablature guitar-tabs learning-guitar
Last synced: 17 Jul 2026
https://github.com/earmingol/microbiome-factorization
Examples of using PhyloFactor and DEICODE to analyze microbiome datasets.
factorization factorization-methods machine-learning microbiome microbiome-datasets
Last synced: 24 Mar 2025
https://github.com/earmingol/cobra_utils
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
biochemistry bioinformatics cobra cobrapy computational-biology metabolic-models metabolic-network metabolic-reconstruction modeling modeling-tool python systems-biology
Last synced: 17 May 2026
https://github.com/earmingol/personal-collection
Learning how to implement different algorithms
Last synced: 24 Mar 2025