Projects in Awesome Lists by fhdsl
A curated list of projects in awesome lists by fhdsl .
https://github.com/fhdsl/design_of_data_analysis
Collaboration with Roger Peng
Last synced: 13 Apr 2025
https://github.com/fhdsl/choosing_genomics_tools
A course to help learners find resources and tools to help them process and interpret their genomic data
Last synced: 08 Mar 2026
https://github.com/fhdsl/code_review
A repository with tips about code review and implementing it in a lab
codereview fhdasl hutch-course training
Last synced: 06 Mar 2026
https://github.com/fhdsl/AI_for_Efficient_Programming
This course on AI for software development explores the use of AI large language models (ChatGPT, Bard, etc) and their potential benefits and challenges. Hands-on activities show the ways in which AI can speed up software development tasks and free up time for more creative and strategic work, maximizing benefits/efficiency while limiting harm.
ai-uses annotate-code artificial-intelligence audience-researchers audience-software-developers category-software-dev chatbot course ethics hutch-course itn-course launched-apr2023 learn-ai llm refactor-code software-learning understand-code write-code
Last synced: 11 Sep 2025
https://github.com/fhdsl/ai_for_efficient_programming
This course on AI for software development explores the use of AI large language models (ChatGPT, Bard, etc) and their potential benefits and challenges. Hands-on activities show the ways in which AI can speed up software development tasks and free up time for more creative and strategic work, maximizing benefits/efficiency while limiting harm.
ai-uses annotate-code artificial-intelligence audience-researchers audience-software-developers category-software-dev chatbot course ethics hutch-course itn-course learn-ai llm refactor-code software-learning understand-code write-code
Last synced: 13 Apr 2025
https://github.com/fhdsl/github-actions-workshop
A sandbox of github actions to play with for the purposes of a workshop (or independent learning)
Last synced: 17 Feb 2026
https://github.com/fhdsl/daseh
🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
beginner beginner-friendly beginner-programming course daseh data-science data-science-programming environmental-health niehs public-health r-programming tidyverse
Last synced: 19 Mar 2026
https://github.com/fhdsl/data_snacks
Sharing cool data tricks in Python and R
Last synced: 10 Jan 2026
https://github.com/fhdsl/intermediate-git-github
You will expand your current knowledge of Git and GitHub to help your research be more collaborative, reproducible, and transparent.
hutch-course reproducible-research
Last synced: 09 Mar 2026
https://github.com/fhdsl/metricminer
R package that digs up data that matters from APIs, making it dashboard-ready
Last synced: 09 May 2025
https://github.com/fhdsl/introduction_to_reproducible_research
Collaboration with Roger Peng
Last synced: 13 Apr 2025
https://github.com/fhdsl/dasehr
DaSEH Course Data
daseh data-package edtech-software environmental-health
Last synced: 25 Aug 2025
https://github.com/fhdsl/ethical_data_handling_for_cancer_research
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
audience-leaders audience-researchers category-best-practices course current-concerns data-sharing de-identification ethics hipaa itn-course launched-aug2023 personal-identifiable-information-pii privacy protected-health-information-phi risk security
Last synced: 19 Mar 2026
https://github.com/fhdsl/overleaf_and_latex_for_scientific_articles
This course is designed to help researchers and trainees write scientific articles using LaTeX and Overleaf.
arxiv audience-leaders audience-researchers category-fundamentals-tools-resources collaboration course getting-help itn-course latex launched-aug2023 overleaf scientific-publications templates typesetting
Last synced: 21 Apr 2026
https://github.com/fhdsl/ai_for_decision_makers
This set of four mini courses helps leaders make strategic decisions, drive innovation, enhance efficiency, and foster a culture that embraces the transformative power of these technologies.
ai ai-tasks audience-leaders avoiding-harm category-fundamentals-tools-resources course hutch-course itn-course launched-dec2023 policy regulations using-ai
Last synced: 13 Feb 2026
https://github.com/fhdsl/metricminer-dashboard
A template dashboard that helps you display your metricmined data in no time!
Last synced: 05 Mar 2025
https://github.com/fhdsl/bash_for_bio
Reworking of the Bash for HPC book into a class format
Last synced: 14 Feb 2026
https://github.com/fhdsl/github_automation_for_scientists
This course walks through why's and the how's for using automation to boost scientific software development process.
activities audience-software-developers automation category-software-dev course github-actions itn-course launched-nov2023 templates troubleshooting
Last synced: 17 Jul 2025
https://github.com/fhdsl/containers_for_scientists
A course to introduce Docker for research purposes
containers docker future-course itn-course
Last synced: 25 Sep 2025
https://github.com/fhdsl/conrad
Client for the Microsoft Cognitive Services Text to Speech REST API (reboot of the mscstts package)
Last synced: 21 Sep 2025
https://github.com/fhdsl/intro_to_command_line
Fluency in programming and data science requires using computer software from the Command Line, a text-based way of controlling the computer. You will go on a guided under-the-hood tour behind the graphical interface we typically use: you will learn how to interact and manipulate files, folders, and software via the Command Line.
Last synced: 07 Aug 2025
https://github.com/fhdsl/nyu2024-galaxy-activity
Demo for possible website for ITN NYU 2024 Workshops (logistics and activity walkthroughs)
Last synced: 04 Sep 2025
https://github.com/fhdsl/dataviz_considerations
ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization
Last synced: 23 Aug 2025
https://github.com/fhdsl/widget-survey
Put low maintenance mini surveys in your websites/courses/repositories!
Last synced: 19 Mar 2026
https://github.com/fhdsl/fh_letterhead
A LaTeX template for Fred Hutch letterhead
Last synced: 21 Oct 2025
https://github.com/fhdsl/uplifthub_website
Website for the Uplift Hub [deprecated - this was for a grant proposal]
Last synced: 05 Mar 2026
https://github.com/fhdsl/gdscn_biodigs_amr
This activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.
Last synced: 05 Mar 2025
https://github.com/fhdsl/Intermediate_Git_GitHub_Student_Practice
Practice space for DaSL students on Git branching and GitHub pull requests.
Last synced: 25 Sep 2025
https://github.com/fhdsl/fhdsl_training_kit
This resource is intended to provide guidance and assistance for creating online and in-person training materials.
Last synced: 25 Aug 2025
https://github.com/fhdsl/ottr_quarto
OTTR template for making a Quarto based website
Last synced: 26 May 2026
https://github.com/fhdsl/personas-old
Where RDI curates the DaSL Data Science Personas
data-science personas training
Last synced: 05 Mar 2025
https://github.com/fhdsl/ottr_quarto_website
OTTR template for making a Quarto based website
Last synced: 01 Aug 2025
https://github.com/fhdsl/dasl_collection
📚 An auto-generating library of Data Science Lab Github-based content
Last synced: 24 Apr 2026
https://github.com/fhdsl/fh_cluster201
An emerging course for effective use of FH Computing.
Last synced: 21 Apr 2026
https://github.com/fhdsl/umich_itn_workshop
An OTTR website for resources and activities for the ITN workshops at UMich 2025
Last synced: 10 Jun 2025
https://github.com/fhdsl/containers-for-scientists-sandbox
A sandbox of dockerfiles to play with for the purposes of a workshop (or independent learning)
Last synced: 02 Jul 2025
https://github.com/fhdsl/anvil_urban_genomics_pca
Lab module and lectures for exploring PCA using feral pigeon populations
anvil course genomics pca urban-data-science
Last synced: 05 Mar 2025
https://github.com/fhdsl/anvil_demos
⏱ 30-minute demos and tutorials from our live AnVIL series
anvil cloud cloud-computing course genomics module research
Last synced: 13 Apr 2025
https://github.com/FredHutch/hutchplot
Color Palette and Logos for the Fred Hutchinson Cancer Center
Last synced: 09 May 2025
https://github.com/fhdsl/datathon_winter_2025
Files for DataThon winter 2025
Last synced: 16 Mar 2025
https://github.com/fhdsl/capstone-sandbox
Sandbox for the activities associated with the reproducibility capstone course: https://hutchdatascience.org/reproducibility_capstone/
Last synced: 04 Feb 2026
https://github.com/fhdsl/quiz-recordr
Recording responses from swirl, learnr to a googlesheet for easy grading and teacher tracking
Last synced: 12 Jun 2025
https://github.com/fhdsl/bench_to_bytes
A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.
Last synced: 19 Apr 2026
https://github.com/fhdsl/data_on_anvil
This is a guide to all the ways to access, upload, and use data on NHGRI's AnVIL platform.
Last synced: 08 Oct 2025
https://github.com/fhdsl/itn_course_search
A searchable table for ITN courses
Last synced: 16 Oct 2025
https://github.com/fhdsl/anvil_collection
📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects
anvil content-library edtech-software gdscn website
Last synced: 25 Oct 2025
https://github.com/fhdsl/anvil_data_subsetting
Tutorial for running the fastq_subsample WDL workflow on AnVIL!
anvil course genomics module wdl wdl-workflow workflow
Last synced: 25 Oct 2025
https://github.com/fhdsl/developing_wdl_workflows
"Developing WDL Workflows" shows a bioinformatics workflow developer how to strategically develop and scale up a WDL workflow that is iterative, reproducible, and efficient in terms of time and resource used. This guide is flexible regardless of where the data is, what computing resources are being used, and what software is being used.
Last synced: 07 Feb 2026
https://github.com/fhdsl/dataviz_practice
ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization
Last synced: 15 Apr 2026
https://github.com/fhdsl/simplydatascience.org
Data science is for everyone -- a social media outreach project
Last synced: 19 Mar 2026
https://github.com/fhdsl/itn-metric
Analyze ITCR metrics using {metricminer}
Last synced: 19 Mar 2026
https://github.com/fhdsl/seattlestatsummer_r
A 4-day introduction to R programming, focused on Fred Hutch Research Interns
beginner beginner-friendly course data-analysis data-science introduction-to-programming r-programming tidyverse
Last synced: 19 Mar 2026
https://github.com/fhdsl/anvil_poll_2024
A summary of our findings from the 2024 State of the AnVIL user poll.
2024 anvil state-of-the-anvil user-poll website
Last synced: 19 Mar 2026
https://github.com/fhdsl/intermediate_git_github_student_practice
Practice space for DaSL students on Git branching and GitHub pull requests.
Last synced: 19 Mar 2026
https://github.com/fhdsl/dasl-snack-github
A DaSL training "snack" covering the benefits and basics of using Git and GitHub to support your biomedical data science work.
hutch-course reproducible-research
Last synced: 19 Mar 2026
https://github.com/fhdsl/sota2024_reportout
Materials associated with the Report Out for the State of the AnVIL 2024
Last synced: 02 Mar 2026
https://github.com/fhdsl/syllabus
Non-Required Reading for the Fred Hutch Data Science Lab
Last synced: 05 Mar 2026
https://github.com/fhdsl/itn_workshops_2024
An OTTR website for resources and activities for the ITN workshops at the ITCR Annual Meeting 2024
Last synced: 17 Apr 2026
https://github.com/fhdsl/robust_software_development
ITN course on robust software development and giving your code base a full set of features beyond the code itself
Last synced: 17 Apr 2026
https://github.com/fhdsl/fh_wdl101_cromwell
An introduction to using Cromwell and WDL at the Fred Hutch
course fredhutch hutch-course wdl
Last synced: 20 Apr 2026
https://github.com/fhdsl/gdscn_biodigs_book
Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS.
anvil biodigs course gdscn r-programming tutorial
Last synced: 21 Apr 2026
https://github.com/fhdsl/nih_data_sharing
Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.
audience-leaders budgeting category-best-practices data-management data-sharing data-storage dms-plan grant-proposals grant-submission hutch-course itn-course nih policy
Last synced: 21 Apr 2026
https://github.com/fhdsl/gdscn_sars_rstudio_on_anvil
Lab module and lectures for identifying phylogenetic history of SARS variants using R
anvil course gdscn module phylogenetic-analysis sars-cov-2
Last synced: 21 Apr 2026