Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by hilldr
A curated list of projects in awesome lists by hilldr .
https://github.com/hilldr/munera2017
Analysis methods for the manuscript "Manipulation of a conserved BMP-HOX pathway promotes formation of human large intestinal organoids" by Jorge Munera et al. Cell Stem Cell 2017
Last synced: 12 Nov 2024
https://github.com/hilldr/finkbeiner_stemcellreports2015
Datasets and R scripts related to the manuscript "Transcriptome-wide analysis reveals hallmarks of human intestine development and maturation in vitro and in vivo.""
Last synced: 12 Nov 2024
https://github.com/hilldr/astrovirus
Evaluating the transcriptional response of human enteroids to astrovirus infection
Last synced: 12 Nov 2024
https://github.com/hilldr/stm_dual_rnaseq
Evaluating the differential alignment of host and microbe RNA from STM-injected HIOs
Last synced: 12 Nov 2024
https://github.com/hilldr/seqretriever
This R package formats RNAseq gene expression data for easy to read and convenient visual representation.
Last synced: 12 Nov 2024
https://github.com/hilldr/org_manuscript_template
Biorxiv latex template for implementation in EMACS Org-Mode
Last synced: 12 Nov 2024
https://github.com/hilldr/hio_microinjection
This protocol describes the measurement of epithelial barrier permeability in real-time following pharmacologic treatment in human intestinal organoids using fluorescent microscopy and live cell microscopy
ggplot2 human-intestinal-organoids imagej latex-examples makefile organoid-microinjection protocol r reproducible-experiments reproducible-research tidyverse
Last synced: 15 Nov 2024
https://github.com/hilldr/pbsw
This bash script automatically generates PBS job scripts based on user-specified inputs
Last synced: 12 Nov 2024
https://github.com/hilldr/hill_hio_colonization_2017
Analysis scripts for the manuscript "Bacterial colonization stimulates a complex physiological response in the immature human intestinal epithelium"
Last synced: 12 Nov 2024
https://github.com/hilldr/miller_lung_organoids_2017
Data analysis code from the manuscript "In Vitro Induction and In Vivo Engraftment of Lung Bud Tip Progenitor Cells Derived from Human Pluripotent Stem Cells" by AJ Miller et al.
Last synced: 12 Nov 2024
https://github.com/hilldr/hilldr.github.io
personal website generated via hugo
Last synced: 12 Nov 2024
https://github.com/hilldr/tsai_lgr5_endoderm_2015
Analysis scripts pertaining to the manuscript "LGR4 and LGR5 function redundantly during human endoderm differentiation" by Yu-Hwai Tsai et. al 2015
Last synced: 12 Nov 2024
https://github.com/hilldr/md5_compare
Generate and check MD5 hashes recursively between two directories
Last synced: 12 Nov 2024
https://github.com/hilldr/hlo_elife2015
Datasets and R scripts related to the manuscript "In vitro generation of human pluripotent stem cell derived lung organoids "
Last synced: 12 Nov 2024
https://github.com/hilldr/permeability_imaging
convert time-lapse VSI-format microscopy images into a table containing the mean, median, minimum, and maximum intensity
Last synced: 12 Nov 2024