Projects in Awesome Lists by kreshuklab
A curated list of projects in awesome lists by kreshuklab .
https://github.com/kreshuklab/plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
bioimage-analysis bioinformatics deep-learning image-segmentation neural-network segmentation unet
Last synced: 24 Dec 2025
https://github.com/kreshuklab/go-nuclear
Guides and code for 3D nuclear instance segmentation
bioimage-analysis instance-segmentation
Last synced: 14 Dec 2025
https://github.com/kreshuklab/predoc-course
Kreshuk Lab's EMBL EIPP predoc course teaching material, each branch keeps the record of a specific season
Last synced: 13 Mar 2026
https://github.com/kreshuklab/matchmaker
Tool for segmentation-based deformable registration
Last synced: 24 Jun 2026
https://github.com/kreshuklab/embryo_stage_classifier
Model for classifying drosophila embryo stages
Last synced: 28 May 2026
https://github.com/kreshuklab/xray_brain_cells
Brain cell classification by morphology
Last synced: 01 Jun 2026
https://github.com/kreshuklab/zoocell_seg_ws_2026
A repository containing a pipeline for teaching fine-tuning pipeline of 3D-EM segmentation models. Used in the ZooCell meeting at Naples, April 2026.
Last synced: 24 Jun 2026
https://github.com/kreshuklab/cryosresclemcontrol
Software to control the Cryo Super-Resolution Light Microscope.
Last synced: 24 Jun 2026
https://github.com/kreshuklab/diff_detect
Difference Detective (Lab day 2026)
Last synced: 04 Jul 2026
https://github.com/kreshuklab/drosophila_embryo_cells
Drosophila emryo cell classification
Last synced: 24 May 2026
https://github.com/kreshuklab/unsup_pix_embed
Experiments for unsupervised pixel embeddings
Last synced: 07 Apr 2025
https://github.com/kreshuklab/summer
deep learning project for summer school
Last synced: 28 May 2026