Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by lauraluebbert
A curated list of projects in awesome lists by lauraluebbert .
https://github.com/lauraluebbert/grubclub
grubClub PCB, arena STL, and component list
Last synced: 15 Oct 2024
https://github.com/lauraluebbert/confocal_z-stack_analysis
Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.
confocal-images confocal-microscopy confocal-zstack-images despeckle image-processing maximum-projection scalebar scikit-image
Last synced: 15 Oct 2024
https://github.com/lauraluebbert/transcriptomics-over-time
Automatically generates plots showing the number of studies using transcriptomics technologies over time.
Last synced: 15 Oct 2024
https://github.com/lauraluebbert/thorimage-sync_2p-analysis
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
2-photon calcium-imaging image-processing thorimage thorsync
Last synced: 15 Oct 2024
https://github.com/lauraluebbert/phd_thesis
Code to reproduce all figures included in my Ph.D. thesis not previously published in papers.
Last synced: 15 Oct 2024