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Projects in Awesome Lists by lczech

A curated list of projects in awesome lists by lczech .

https://github.com/lczech/gappa

A toolkit for analyzing and visualizing phylogenetic (placement) data

c-plus-plus evolutionary-placement gappa genesis phylogenetic-data phylogenetic-placement phylogenetics placement

Last synced: 31 Oct 2024

https://github.com/lczech/grenedalf

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

allele-frequencies evolve-and-resequence pool-sequencing poolfstat popoolation popoolation2 population-genetics

Last synced: 14 Oct 2024

https://github.com/lczech/thesis

My dissertation / PhD thesis

phylogenetic-placement phylogenetics thesis

Last synced: 14 Oct 2024

https://github.com/lczech/nidhoggr

Snakemake pipeline to run phylogenetic tree inferences

Last synced: 14 Oct 2024

https://github.com/lczech/placement-methods-paper

Accompanying code repository with scripts, programs and data for our papers.

Last synced: 14 Oct 2024

https://github.com/lczech/popoolation2

Forked from https://sourceforge.net/p/popoolation2/

Last synced: 14 Oct 2024

https://github.com/lczech/dinoflagellate-paper

Code repository for the dinophyte DNA in tropical rain forest soils paper

Last synced: 14 Oct 2024

https://github.com/lczech/genesis-gappa-paper

Scripts and Tests for the Application Note of genesis and gappa

Last synced: 14 Oct 2024

https://github.com/lczech/grenepilot-paper

Scripts and analyses for the GrENE-net pilot dataset

Last synced: 14 Oct 2024

https://github.com/lczech/eseb-birds

Last synced: 14 Oct 2024

https://github.com/lczech/popoolation

Forked from https://sourceforge.net/p/popoolation/

Last synced: 14 Oct 2024

https://github.com/lczech/greneselect

Snakemake playground for selection analyses in evolve & resequence experiments

Last synced: 14 Oct 2024

https://github.com/lczech/pllprac

Programming Practical of the Exelicis Lab using the Phylogenetic Likelihood Library

Last synced: 14 Oct 2024

https://github.com/lczech/lucas-dark-syntax

My syntax scheme for atom.

Last synced: 14 Oct 2024

https://github.com/lczech/ratatosk

Snakemake pipeline for phylogenetic placement of metagenomic sequences

Last synced: 14 Oct 2024

https://github.com/lczech/come_2017

Some sample files for the CoME2017 course to play around with.

Last synced: 14 Oct 2024

https://github.com/lczech/grenedalf-paper

Code for tests and benchmarks of our paper on grenedalf

Last synced: 14 Oct 2024