Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by lpantano
A curated list of projects in awesome lists by lpantano .
https://github.com/lpantano/seqcluster
small RNA analysis from NGS data
mirna report sequencing smallrna trna
Last synced: 25 Nov 2024
https://github.com/lpantano/degreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
bioconductor differential-expression qc r report rna-seq smallrna
Last synced: 27 Oct 2024
https://github.com/lpantano/seqbuster
pipeline for the analysis of small RNA data
Last synced: 13 Oct 2024
https://github.com/lpantano/mypubs
creation of methods with the purpose of tools comparison
Last synced: 25 Nov 2024
https://github.com/lpantano/isomirs
analyze isomiRs from seqbuster tool
analyze-isomirs bioconductor isomirs mirna r
Last synced: 27 Oct 2024
https://github.com/lpantano/seqclusterviz
visualization of seqcluster output, try at:
mirna smallrna smallrna-seq trna-derived-small-rna visualization
Last synced: 13 Oct 2024
https://github.com/lpantano/bcbiosmallrna
R package to analyze data after small RNAseq with bcbio
Last synced: 25 Nov 2024
https://github.com/lpantano/bcbio.coverage
utils functions for exome coverage plots as quality controls
Last synced: 13 Oct 2024
https://github.com/lpantano/eggs
new ideas that may fails or success about bioinformatics
Last synced: 25 Nov 2024
https://github.com/lpantano/seqcluster-helper
Help for the installation and configuration of seqcluster tool
Last synced: 25 Nov 2024
https://github.com/lpantano/asmfinder
find allele specific hemi-methylation sites from rrbs data
Last synced: 25 Nov 2024
https://github.com/lpantano/r2dropsmart
Sync entire folders to dropbox with rdrop2 package
Last synced: 25 Nov 2024
https://github.com/lpantano/scounts
small RNA counts bias correction based on Argyropoulos, et al (2017)
Last synced: 25 Nov 2024
https://github.com/lpantano/dummychapter1
Example of package using inst files in the vignette
Last synced: 25 Nov 2024
https://github.com/lpantano/small-rna-in-parkinson
Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson's disease revealed by deep sequencing analysis https://www.ncbi.nlm.nih.gov/pubmed/26530722
Last synced: 25 Nov 2024
https://github.com/lpantano/smallrnacountdata
plate to share smallRNAseq data analyzed with same methods
Last synced: 25 Nov 2024
https://github.com/lpantano/stimulus.cc
source for the web page stimulus.cc
Last synced: 25 Nov 2024
https://github.com/lpantano/small_rna_annotation
files from different databases adapted for pipelines
Last synced: 25 Nov 2024
https://github.com/lpantano/chrom_map
Map between genome chromosome naming using https://github.com/dpryan79/ChromosomeMappings
Last synced: 25 Nov 2024
https://github.com/lpantano/ml_project
R code for machine learning project for data science coursera
Last synced: 25 Nov 2024
https://github.com/lpantano/invgex
detect gene expression from inversion genotypes
Last synced: 25 Nov 2024
https://github.com/lpantano/schizomic
sites to place last publications, studies about schizophrenia from psychology to psychiatry. It starts as personal site but it is more than welcome any pull request.
Last synced: 25 Nov 2024
https://github.com/lpantano/papersdb
connect to pubmed to get main information and save in a db to be analyzed after that
Last synced: 25 Nov 2024
https://github.com/lpantano/custom_genome_annotation
some annotation that are not that standard but still useful
Last synced: 25 Nov 2024
https://github.com/lpantano/sra
python package to download and convert rsa files
Last synced: 25 Nov 2024
https://github.com/lpantano/cambridge-bio-developer-ladies
material we talk in our meet-ups
Last synced: 25 Nov 2024
https://github.com/lpantano/bioprojectr
project template for rstudio compatible with my everyday bioinformatics work
Last synced: 25 Nov 2024
https://github.com/lpantano/myrfunctions
some functions that I use to increase productivity and reproducibility
Last synced: 25 Nov 2024
https://github.com/lpantano/women-leaders-compbio
a list of companies in boston area to list all women leaders
Last synced: 25 Nov 2024
https://github.com/lpantano/ich-wrapper
easily use ipython-cluster-helper package to create custom framework using bcbio function
Last synced: 25 Nov 2024
https://github.com/lpantano/notes.statistics
my notes about good resources I found over internet
Last synced: 25 Nov 2024
https://github.com/lpantano/datasciencecoursera
Repo for the data science certificate at coursera
Last synced: 25 Nov 2024
https://github.com/lpantano/mirna-evolution-analysis
some basic script to make multi-alignment and parse the changes
Last synced: 25 Nov 2024
https://github.com/lpantano/rshiny-mot
rshiny showing table with multi-omic tools
Last synced: 25 Nov 2024
https://github.com/lpantano/mirdeep2_core
Main core scripts for novel mirna discovery from bam files
Last synced: 25 Nov 2024
https://github.com/lpantano/mygeekcode
basic projects using arduino and rasperry pi
Last synced: 25 Nov 2024