Projects in Awesome Lists by mbari-org
A curated list of projects in awesome lists by mbari-org .
https://github.com/mbari-org/pacific-sound-notebooks
Juptyer notebook tutorials on using the data in the AWS pacific-sound registry for ocean soundscape research, education, and the arts
acoustics aws bluewhale deep-learning humpback humpback-whale machine-learning marine-data open-access open-data open-datasets open-science python
Last synced: 29 Aug 2025
https://github.com/mbari-org/vars-annotation
Video Annotation Application for MBARI's Media Management (M3) software stack
Last synced: 06 Jul 2025
https://github.com/mbari-org/pbp
Process ocean audio data archives to daily analysis products of hybrid millidecade spectra using PyPAM.
audio-processing cloud docker hybrid-millidecade-bands notebook pypam soundscape
Last synced: 28 Jun 2025
https://github.com/mbari-org/deepsea-track
Lightweight tracking software for tracking multiple objects in deep-sea underwater video. It is designed to be used with detection output in XML files in PASCAL VOC format or with detection messages sent with ZeroMQ. It generates unique VisualEvent track sequences for analysis.
deepsea opencv4 tracking-algorithm tracking-by-detection video-processing video-processor
Last synced: 13 Oct 2025
https://github.com/mbari-org/vampire-squid
A video asset manager for tracking videos and camera deployments (e.g. ROV dives, AUV deployments)
Last synced: 13 Apr 2025
https://github.com/mbari-org/sdcat
Sliced Detection and Clustering Analysis Toolkit
clustering deepsea drone hdbscan-clustering-algorithm object-detection plankton sahi saliency-detection uav yolov11 yolov5 yolov8
Last synced: 13 Apr 2025
https://github.com/mbari-org/vcr4j
Java API for communicating with video 'devices', both real and virtual. Also supports the Sony 9-pin protocol
Last synced: 25 Jul 2025
https://github.com/mbari-org/deepsea-ai
DeepSea-AI is a Python package to simplify processing deep sea video in AWS https://aws.amazon.com from a command line.
aws aws-cdk fathomnet object-detection tracking-by-detection video-processing video-processing-pipeline
Last synced: 13 Apr 2025
https://github.com/mbari-org/cthulhu
Cross-platform video player that supports annotation localizations (i.e. bounding boxes)
Last synced: 13 Apr 2025
https://github.com/mbari-org/seafloormappingdb
Make MBARI seafloor mapping datasets more accessible and useful
Last synced: 13 Apr 2025
https://github.com/mbari-org/sharktopoda1
Native video playback application for Mac OS X with remote UDP control
Last synced: 13 Apr 2025
https://github.com/mbari-org/Sharktopoda1
Native video playback application for Mac OS X with remote UDP control
Last synced: 21 Nov 2025
https://github.com/mbari-org/ecoz2-whale-cb
LPC Based K-Means Clustering on Humpback Whale Vocalizations
clustering clustering-evaluation k-means linear-predictive-coding whale-song-files
Last synced: 27 Oct 2025
https://github.com/mbari-org/voc-cropper
A simple utility to crop from PNG or JPEG images bounding box annotations in PASCAL VOC formatted annotations. This is useful to extract images (and resize them) for classification or clustering
Last synced: 13 Apr 2025
https://github.com/mbari-org/fastapi-yolov5
YOLOv5 Machine Learning API powered by the FastAPI framework
Last synced: 12 Apr 2025
https://github.com/mbari-org/lcm-websocket-server
WebSocket server for republishing LCM messages.
Last synced: 27 Jul 2025
https://github.com/mbari-org/ecoz2rs
ECOZ2 in Rust
hidden-markov-models hmm k-means linear-predictive-coding signal-recognition supervised-learning unsupervised-learning vector-quantization
Last synced: 13 Apr 2025
https://github.com/mbari-org/sharktopoda
Mac Video Player for creating, editing, and viewing localizations.
Last synced: 19 Jun 2025
https://github.com/mbari-org/Sharktopoda
Mac Video Player for creating, editing, and viewing localizations.
Last synced: 21 Nov 2025
https://github.com/mbari-org/fastapi-localtrack
Lightweight Machine Learning API for running video tracking pipelines powered by the FastAPI framework
Last synced: 04 Jul 2025
https://github.com/mbari-org/vars-gridview
VARS GridView is a tool for reviewing and correcting VARS localizations in bulk.
Last synced: 30 Oct 2025
https://github.com/mbari-org/aipipeline
Library for running detection, clustering or classification ai pipelines plus performance monitoring using ApacheBeam
apache-beam foundation-models image-classification object-detection object-tracking video-processing-pipeline
Last synced: 13 Apr 2025
https://github.com/mbari-org/humpback-whale-song-detection
Applying the NOAA/Google Humpback Whale Song Detector on Pacific Ocean Sound data.
Last synced: 29 Mar 2025
https://github.com/mbari-org/mbari_wec_template_cpp
C++ template repo for external ROS2-enabled controller for MBARI's wave energy conversion buoy (sim or physical)
Last synced: 29 Mar 2025
https://github.com/mbari-org/mbari_wec_template_py
Python template repo for external ROS2-enabled controller for MBARI's wave energy conversion buoy (sim or physical)
Last synced: 29 Mar 2025
https://github.com/mbari-org/aidata
Extract, transform, and load/download media and annotations for detection, clustering or classification workflows. https://docs.mbari.org/internal/ai/data
ai database etl machine-learning
Last synced: 26 Dec 2025
https://github.com/mbari-org/pbp-doc
Sources for https://docs.mbari.org/pbp/
Last synced: 23 Apr 2025
https://github.com/mbari-org/m3-quickstart
A simple and quick method to run MBARI's Video Annotation and References System
Last synced: 13 Apr 2025
https://github.com/mbari-org/docker-polynote
A docker container for running polynote.
Last synced: 07 Jan 2026
https://github.com/mbari-org/fastapi-vss
RESTful API for vector similarity search. It uses the Python web framework FastAPI. This accelerates machine learning workflows that require vector similarity search using foundational models.
fastapi foundation-models image-classification vision-transformer
Last synced: 13 Apr 2025
https://github.com/mbari-org/blaise
A utility to crop images according to given annotations ("blazingly fast")
classification image-processing pascal-voc rust
Last synced: 19 Oct 2025
https://github.com/mbari-org/hbwasa2020
Markdown version of ASA 2020 Poster: Humpback Whale Song Analysis Based on Automatic Classification Performance
Last synced: 29 Mar 2025
https://github.com/mbari-org/dash5
Web based UI and client applications for MBARI.
Last synced: 30 Apr 2025
https://github.com/mbari-org/deepsea-frameextractor
FFMPEG based docker image for extracting still images from video from timecodes, strides, etc. for labeling tasks. https://github.org/mbari-org/deepseat-frameextractor
ffmpeg underwater-images underwater-robotics
Last synced: 29 Mar 2025
https://github.com/mbari-org/kelpcoverage
calculating kelp coverage from UAV imagery
Last synced: 11 Aug 2025
https://github.com/mbari-org/rims-ptvr
Version of RIMS for Planktivore Project
Last synced: 29 Jun 2025
https://github.com/mbari-org/espclient
An ESP client implementation in Rust
Last synced: 29 Mar 2025
https://github.com/mbari-org/odss2dash
This service pushes Tracking DB platform positions to configured TethysDash instances, which in turn push them to clients via websockets
Last synced: 20 Jun 2025
https://github.com/mbari-org/qgeomap
A Quasar component for geometry viewing and editing
Last synced: 25 Jul 2025
https://github.com/mbari-org/annosaurus
Service for storing and retrieving video/image annotations from VARS
Last synced: 01 Aug 2025
https://github.com/mbari-org/pbp-jupyter
Creating and using a Jupyter environment with the mbari-pbp package already installed
Last synced: 29 Mar 2025
https://github.com/mbari-org/fastapi-tator
RESTful API for bulk operations on a Tator annotation database on clustered, labeled, localization data. It uses the Python web framework FastAPI.
annotation-processing fastapi tator
Last synced: 20 Jun 2025
https://github.com/mbari-org/scala3-mbari-cli.g8
A sbt template for scaffolding scala 3 command line interface apps
Last synced: 13 Aug 2025
https://github.com/mbari-org/bluewhale-a-inference-jetson
Blue Whale A inference optimization project using Jetson Nano
Last synced: 16 Aug 2025
https://github.com/mbari-org/beholder-py
Python client library for beholder.
Last synced: 05 Oct 2025
https://github.com/mbari-org/oceansoundscape
A python package for analyzing ocean acoustic data.
acoustics bluewhale soundscape
Last synced: 30 Aug 2025
https://github.com/mbari-org/charybdis
A video annotation query server that integrates Annosaurus and Vampire-squid
Last synced: 29 Mar 2025
https://github.com/mbari-org/clusterpod
Image clustering and analysis
cluster-analysis clustering-algorithm deep-learning transformer umap-hdbscan
Last synced: 31 Aug 2025
https://github.com/mbari-org/imgfx
Playground for testing image annotation in JavaFX
Last synced: 29 Mar 2025
https://github.com/mbari-org/lrauv_backseat_python_template
Template repository for implementing the LRAUV Backseat LCM Interface
Last synced: 29 Mar 2025
https://github.com/mbari-org/bio-ai
command line tool to run models and manage data for the MBARI BioDiversity project.
classification clustering deepsea object-detection
Last synced: 29 Mar 2025
https://github.com/mbari-org/auv-python
Python code for processing MBARI AUV instrument data
Last synced: 09 Mar 2025
https://github.com/mbari-org/annosaurus-java-sdk
A Java client SDK for the Annosaurus microservice.
Last synced: 29 Mar 2025
https://github.com/mbari-org/mxm-doc
MXM Documentation (WIP) - https://docs.mbari.org/internal/mxm/
api dorado graphql lrauv mission-control openapi protocol wavegilder
Last synced: 29 Mar 2025
https://github.com/mbari-org/sgn.player
A basic audio visualizer/player based on WaveSurfer and Quasar
Last synced: 29 Mar 2025
https://github.com/mbari-org/gpdviz
Web-based visualization of geolocated point data streams in real-time
openapi scala typescript vue websocket
Last synced: 13 Jul 2025
https://github.com/mbari-org/jsharktopoda
Java video player that allows remote control via UDP
Last synced: 29 Mar 2025
https://github.com/mbari-org/vars-localize
Tool for creating localizations within the VARS database.
Last synced: 29 Mar 2025
https://github.com/mbari-org/expd-java
Java libraries for accessing MBARI's expedition data
Last synced: 24 Oct 2025
https://github.com/mbari-org/sbtnatimage
Simple project to exercise sbt-native-image along with Github Actions to create binary releases for Linux, MacOS, and Windows
Last synced: 29 Mar 2025
https://github.com/mbari-org/rust-microservice
experimentation with actix, tokio, postgres, barrel...
Last synced: 29 Mar 2025
https://github.com/mbari-org/beholder
Service that extracts images from video (with caching)
Last synced: 29 Mar 2025
https://github.com/mbari-org/vars
Documentation for running MBARI's Video Annotation and Reference System
Last synced: 27 Jul 2025
https://github.com/mbari-org/vars-kb-server
A read-only microservice for the VARS knowledgebase
annotation json knowledge-base scala
Last synced: 29 Mar 2025
https://github.com/mbari-org/ptvr-tools
python scripts and libs for Planktivore data processing
Last synced: 29 Mar 2025
https://github.com/mbari-org/emso-tsc2021-session3
A collection of notebooks for the TSC 2021 "Observing Sound" workshop, Training session 3, Gran Canaria in the Canary Islands, Spain, 20-22 October 2021.
acoustic convolutional-neural-networks deep-learning emso machine-learning open-data python sound
Last synced: 29 Mar 2025
https://github.com/mbari-org/robomaker-helloworld
Simple example on how to run a ros simulation in AWS RoboMaker for CoMPAS lab users
Last synced: 29 Mar 2025
https://github.com/mbari-org/ecoz2-whale
ECOZ2 applied on whale song unit files
hmm k-means linear-predictive-coding supervised-learning unsupervised-learning whale-song-files
Last synced: 29 Mar 2025
https://github.com/mbari-org/kclassify
Tensorflow-Keras image classifier for transfer-learning training either locally or in AWS SageMaker.
Last synced: 29 Mar 2025
https://github.com/mbari-org/vars-legacy-migrator
Tools for migrating legacy VARS databases to current versions
Last synced: 06 Apr 2025