Projects in Awesome Lists by menchelab
A curated list of projects in awesome lists by menchelab .
https://github.com/menchelab/vrnetzer
A Virtual Reality platform for interactive, immersive network exploration.
network-analysis network-visualization virtual-reality
Last synced: 22 Jun 2025
https://github.com/menchelab/multiome
Network-based project to explore gene connectivity through biological scales
Last synced: 07 Feb 2026
https://github.com/menchelab/bioprofiling.jl
A flexible Julia toolkit for high-dimensional cellular profiles
high-content-screening julia morphological-analysis
Last synced: 29 Jul 2025
https://github.com/menchelab/perturbome
Code to reproduce the study: Mapping the perturbome network of cellular perturbations.
Last synced: 19 Apr 2025
https://github.com/menchelab/cartographs_app
A webbased visualization framework for networks.
Last synced: 03 Mar 2026
https://github.com/menchelab/hci-immune-synapse
Companion repository for the article "Morphological profiling of human T and NK lymphocytes identifies actin-mediated control of the immunological synapse"
Last synced: 30 Mar 2025
https://github.com/menchelab/neuwirth_malzl_et_al_2024
Code repository for all analyses shown in Neuwirth and Malzl et al. 2024
Last synced: 02 Feb 2026
https://github.com/menchelab/datadivr-demo
Demo version of the DataDiVR 3-D network visualization software
Last synced: 30 Mar 2025
https://github.com/menchelab/analytics_module
Flask-based server handling data requests from the UI Module (VRNetzer)
Last synced: 19 Apr 2025
https://github.com/menchelab/radipop_scripts
Scripts to train and validate random forest model for HVPG prediction
Last synced: 20 Jul 2025
https://github.com/menchelab/radipop
Predicting portal hypertension outcomes from abdominal CT scans
Last synced: 30 Mar 2025
https://github.com/menchelab/stringex
Contains the StringEx extension for the VRNetzer backend
Last synced: 30 Mar 2025
https://github.com/menchelab/knaus_et_al_2022
This repository contains information and code about the analysis of metabolomics, lipidomics and proteomics for Knaus et al. Large neutral amino acid levels tune perinatal neuronal excitability and survival
Last synced: 30 Mar 2025
https://github.com/menchelab/sa_bone_marrow_scrnaseq
scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.
Last synced: 30 Mar 2025
https://github.com/menchelab/catwork
Enables participants of an event to scan each others QR codes and creates a social network in real time
Last synced: 30 Mar 2025
https://github.com/menchelab/exampleextension
Example Repository of an VRNetzer backend extension
Last synced: 03 Feb 2026
https://github.com/menchelab/radhouani_2025_quantseq
QuantSeq analysis from Radhouani et al., 2025, Science Immunology.
Last synced: 16 Mar 2025
https://github.com/menchelab/radhouani_2025_scrnaseq
scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.
Last synced: 16 Mar 2025
https://github.com/menchelab/novarinocollab
A repository containing the code for the collaboration with the Novarino lab
Last synced: 30 Mar 2025
https://github.com/menchelab/ppi_spread_for_mutsig
Spread mutations capture disturbed repair modules in the PPI
Last synced: 30 Mar 2025
https://github.com/menchelab/mefistotools
Repository containing little helpers for streamlining analysis of mutliomics data with MEFISTO
Last synced: 13 Jun 2025
https://github.com/menchelab/multiomeexplorer
The shiny app for detailed data exploration complementing Buphamalai et.al.
Last synced: 10 Jan 2026
https://github.com/menchelab/ppi_layng
pipeline that fuses PPI + Gene Ontology graphs into protein embeddings and 3D layouts (UMAP/PaCMAP with de-compression diagnostics) for large interaction networks.
Last synced: 01 Jun 2026
https://github.com/menchelab/sctools
Collection of helper functions to make large scale single cell analysis more bearable
Last synced: 13 Feb 2026
https://github.com/menchelab/endotypy
package formulation of endotyping pipeline
Last synced: 07 Oct 2025
https://github.com/menchelab/exposome
This repository will contain the analyses for the human exposure network paper
Last synced: 25 Oct 2025
https://github.com/menchelab/ui_module
User Interface Module for the VRNetzer framework
Last synced: 04 Sep 2025
https://github.com/menchelab/marco
Code for the study conducted by Brunner et al.
Last synced: 04 Aug 2025
https://github.com/menchelab/grundtner_et_al_2025
All the code used for analysis of vagus nerve data with MEFISTO
Last synced: 29 Sep 2025
https://github.com/menchelab/englmaier_et_al_2025
A repository for code associated with codonbias analyses presented in the manuscript
Last synced: 29 Sep 2025
https://github.com/menchelab/SA_bone_marrow_scRNAseq
scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.
Last synced: 09 Aug 2025
https://github.com/menchelab/hfd-mutagenesis
Code for Analysis and Figures of Manuscript "Mutational Landscape of Intestinal Stem Cells After Long-term in Vivo Exposure to High Fat Diet"
Last synced: 12 Aug 2025
https://github.com/menchelab/infowalkr
package implementation of the MultiOme Paper
Last synced: 29 Jun 2025
https://github.com/menchelab/rgb4k
this about color rgb rainbow max experience force lumination
Last synced: 30 Mar 2025
https://github.com/menchelab/grundtner_et_al_2024
All the code used for data analysis with MEFISTO
Last synced: 30 Mar 2025
https://github.com/menchelab/cytodivr
Cytoscape Application to provide feature for the use of the DataDiVR
Last synced: 30 Mar 2025
https://github.com/menchelab/mutsigintskit
Functions for the mutsigints project.
Last synced: 30 Mar 2025
https://github.com/menchelab/mutsigints
Interactions of mutational signatures and cancer states
Last synced: 30 Mar 2025
https://github.com/menchelab/proteinstructurefetch
Repository for the ProteinStructureFetch extensions. An extension for the VRNetzer ecosystem.
Last synced: 30 Mar 2025
https://github.com/menchelab/clustering_smitch
This repository holds code and resources for the intro to clustering for the SMITCH bioinformatics course
Last synced: 30 Mar 2025