https://github.com/mjy/obo_parser

An OBO file parser.

obo ontology parser

Last synced: 11 Apr 2025

https://github.com/mjy/monographers_do

Last synced: 06 Jan 2026

https://github.com/mjy/biosql

The BioSQL database schema and associated scripts.

Last synced: 06 Jan 2026

https://github.com/mjy/rubymorphbank

A ruby gem interface to the services supplied by http://morphbank.net

Last synced: 17 Aug 2025

https://github.com/mjy/generator

ROR app to combine DNA sequence data from multiple FASTA files for phylogenetic inference.

Last synced: 05 Jan 2026

https://github.com/mjy/presentations

Presentations that contain significant personal opinion that might not reflect my employers

Last synced: 25 Mar 2025

https://github.com/mjy/nexus_parser

A parser/lexer for Nexus (phylogenetic) files.

Last synced: 25 Aug 2025

https://github.com/mjy/cgq

computing genonmic quality

Last synced: 15 Feb 2026

https://github.com/mjy/path

a maze of twisty little ideas (about biodiversity informatics), all alike

biodiversity biodiversity-informatics holy-grail species taxonomy

Last synced: 21 Jun 2025

https://github.com/mjy/trias-project-checklist-recipe

R workshop repo

Last synced: 19 Feb 2026

https://github.com/mjy/jowl

Jruby experiments with owlapi

Last synced: 14 Feb 2026

https://github.com/mjy/sharanowski_et_al_2010

Jacknifing scripts referenced in the acknowledgements of this paper

Last synced: 25 Mar 2025

https://github.com/mjy/psy

Perl libraries for handling rRNA annotated multiple sequence alignments, and more

perl phylogeny rrna secondary-structure

Last synced: 25 Mar 2025

https://github.com/mjy/phase-utils

Perl utilities for PHASE phylogenetic tree reconstruction software

Last synced: 25 Mar 2025