Ecosyste.ms: Awesome

https://github.com/mschubert/clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

cluster high-performance-computing lsf r-package sge slurm ssh

Last synced: 22 Jan 2025

https://github.com/mschubert/narray

R package for subset- and name-aware array utility functions

array cran r-package utility

Last synced: 22 Jan 2025

https://github.com/mschubert/tcgabiolinks-downloader

GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package

cancer reproducible-research rstats tcga-data

Last synced: 22 Jan 2025

https://github.com/mschubert/ebits

R bioinformatics toolkit incubator

Last synced: 22 Jan 2025

https://github.com/mschubert/python-obo

Python parser and network representation of Open Biological and Biomedical Ontologies (OBO)

Last synced: 22 Jan 2025

https://github.com/mschubert/cgas_ko

Last synced: 22 Jan 2025

https://github.com/mschubert/pkgbuilds

Build scripts for the Archlinux User Repository

archlinux pkgbuild

Last synced: 22 Jan 2025

https://github.com/mschubert/r-hpc

Last synced: 22 Jan 2025

https://github.com/mschubert/bhtsner

R package for Barnes-Hut t-SNE

Last synced: 22 Jan 2025

https://github.com/mschubert/git-annex

Last synced: 22 Jan 2025

https://github.com/mschubert/python-h5store

Python package for easy loading and saving of HDF5 objects

Last synced: 22 Jan 2025

https://github.com/mschubert/r-h5store

R package for easy loading and saving of HDF5 objects

Last synced: 22 Jan 2025

https://github.com/mschubert/lincs-data-processing

Last synced: 22 Jan 2025

https://github.com/mschubert/nmfconsensus

Parallel version of the BROAD nmfconsensus.R script

Last synced: 22 Jan 2025

https://github.com/mschubert/docker-actions-test

Last synced: 22 Jan 2025

https://github.com/mschubert/grn-aneup-purity

Analysis code for "Gene networks in cancer are biased by aneuploidies and sample impurities"

Last synced: 22 Jan 2025

https://github.com/mschubert/ensembl-rest

Exercises for the Ensembl REST API

Last synced: 22 Jan 2025

https://github.com/mschubert/clustermq-performance

Performance testing for https://github.com/mschubert/clustermq

Last synced: 22 Jan 2025

https://github.com/mschubert/data

A data API for molecular biology

Last synced: 22 Jan 2025

https://github.com/mschubert/boundie

R package for differential expression on count data with parameter bounds

bfgs constrained-optimization negative-binomial-regression optimization r-package

Last synced: 22 Jan 2025

https://github.com/mschubert/biomodels_curation

Scripts used for curation of Blood Coagulation models for the BioModels database

Last synced: 22 Jan 2025

https://github.com/mschubert/mschubert

Last synced: 22 Jan 2025

https://github.com/mschubert/arrayexpress

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ArrayExpress.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ArrayExpress.

Last synced: 22 Jan 2025

https://github.com/mschubert/thesis

My PhD thesis: Gene expression signatures for cancer cell line drug sensitivity and patient outcome

gene-expression phd-thesis signatures

Last synced: 22 Jan 2025

https://github.com/mschubert/overlay

Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree

bioinformatics ebuilds gentoo gentoo-overlay science

Last synced: 22 Jan 2025

https://github.com/mschubert/mad2-transposon

Analysis code for "Cancer tolerance to chromosomal instability is driven by Stat1 inactivation in vivo"

Last synced: 22 Jan 2025

https://github.com/mschubert/toxicgenes

Last synced: 22 Jan 2025

https://github.com/mschubert/snippets

Last synced: 22 Jan 2025

https://github.com/mschubert/symplex

A python package to specify CPlex models using symbolic matrix equations

cplex linear-optimization mixed-integer-programming python symbolic-computation

Last synced: 22 Jan 2025