Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by pachterlab
A curated list of projects in awesome lists by pachterlab .
https://github.com/pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
alphafold2 databases enrichment-analysis ensembl gget ncbi reference uniprot
Last synced: 01 Aug 2024
https://github.com/pachterlab/kallisto
Near-optimal RNA-Seq quantification
kallisto pseudoalignment rna-seq
Last synced: 02 Aug 2024
https://github.com/pachterlab/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Last synced: 02 Aug 2024
https://github.com/pachterlab/kb_python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
bustools kallisto kb-python rna-velocity-estimation scrna-seq single-cell-rna-seq
Last synced: 02 Aug 2024
https://github.com/pachterlab/scRNA-Seq-TCC-prep
Preprocessing of single-cell RNA-Seq (deprecated)
Last synced: 07 Aug 2024
https://github.com/pachterlab/Sircel
Identify cell barcodes from single-cell genomics sequencing experiments
Last synced: 01 Aug 2024