Projects in Awesome Lists by pseudogene
A curated list of projects in awesome lists by pseudogene .
https://github.com/pseudogene/lava-dna
LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)
bioperl genetics lamp perl-scripts primer
Last synced: 12 Aug 2025
https://github.com/pseudogene/genetic-mapper
SVG Genetic Map Drawer
bioinformatics genetic-maps genetics perl-script svg
Last synced: 30 Oct 2025
https://github.com/pseudogene/radmap
Analyse RAD-tags and generate the Genetic Map with GWAS
bioinformatics docker genetic gwas radseq
Last synced: 12 Aug 2025
https://github.com/pseudogene/lamp-virus
Pipeline to develop one-step real-time RT-LAMP assays for specific detection of virus
bioinformatics docker lamp primer scientific virus
Last synced: 12 Aug 2025
https://github.com/pseudogene/ora
Olfactory Receptor family Assigner (bioperl module)
bats bioinformatics bioperl olfactor ora receptor scientific
Last synced: 12 Aug 2025
https://github.com/pseudogene/docker-stacks
Stacks is a software pipeline for building loci from short-read sequences - Now in a Docker
bioinformatics docker-image docker-stacks genetics rad sequencing
Last synced: 12 Aug 2025
https://github.com/pseudogene/lamp-denv
Scripts and tools used to develop one-step real-time RT-LAMP assays for specific detection of dengue virus.
bioinformatics dengue-virus docker lamp primer scientific
Last synced: 12 Aug 2025
https://github.com/pseudogene/contiguator
A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker
bacteria bioinformatics docker genome
Last synced: 12 Aug 2025
https://github.com/pseudogene/gridref
Convert Irish/British Grid Reference points to WGS84
Last synced: 12 Aug 2025
https://github.com/pseudogene/mkssl
Shell script to Create a Certificate Authority and Certificates with OpenSSL
certificate certificate-authority crt openssl signing-certificates
Last synced: 12 Aug 2025
https://github.com/pseudogene/virus_genomes
Collect Virus genomes from "NCBI assembly" database (internal)
Last synced: 12 Aug 2025
https://github.com/pseudogene/lice-mitochondria
Scripts and tools used to analyse mitochondrial sequence variations between to strain of sea-lice (Lepeophtheirus salmonis)
bioinformatics genome scientific sea-lice
Last synced: 12 Aug 2025
https://github.com/pseudogene/irishgrid
Irish Grid Mapping System
converter gps grid-system perl-script svg
Last synced: 13 May 2025
https://github.com/pseudogene/rad-scripts
Various RAD-seq related scripts
bioinformatics emboss pairwise perl rad
Last synced: 12 Aug 2025
https://github.com/pseudogene/uniprime
A workflow-based platform for improved Universal Primer design
bioinformatics genbank pcr primer taxonomy universal-primers
Last synced: 12 Aug 2025
https://github.com/pseudogene/ratt
RATT: Rapid Annotation Transfer Tool (Wellcome Trust Sanger Institute)
Last synced: 12 Aug 2025
https://github.com/pseudogene/aquaexcel
Introductory Bioinformatic Course to Sequencing Data Processing
Last synced: 12 Aug 2025
https://github.com/pseudogene/bioinf-lecture
Jupyter Notebook demonstrating a basic transcriptomic analysis
Last synced: 12 Aug 2025
https://github.com/pseudogene/qdd-docker
User-friendly computer program for microsatellite selection and primer design revisited - Now in a Docker
bioinformatics docker microsatellite qdd
Last synced: 12 Aug 2025