https://github.com/readdy/readdy

Python / C++ based particle reaction-diffusion simulator

cplusplus particles python reaction-diffusion simulation

Last synced: 09 Aug 2025

https://github.com/readdy/readdy_java

This library allows to do particle-based reaction-diffusion simulations.

Last synced: 29 Apr 2025

https://github.com/readdy/readdy_learn

learn reactions from data

Last synced: 28 Oct 2025

https://github.com/readdy/h5rd

lightweight hdf5 wrapper

Last synced: 19 Jun 2025

https://github.com/readdy/graph

Small C++ header-only library containing a graph data structure with flexible vertices

Last synced: 14 May 2026

https://github.com/readdy/readdy-sim-starterkit

This starter kit contains templates and necessary binaries to start simulating right away.

Last synced: 17 Jun 2026

https://github.com/readdy/readdyviewer

Last synced: 15 May 2026

https://github.com/readdy/readdy_documentation

Jekyll source for documentation

Last synced: 02 Aug 2025

https://github.com/readdy/readdy_tutorials

Example notebooks to demonstrate the usage of readdy

Last synced: 10 Jun 2026

https://github.com/readdy/readdy-input-topology-generator

The readdy-input-topology-generator (Topology Generator) creates input topology files for particles and groups, given a file how many particle and how many groups are desired and on which geometry (i.e. potentials) these particles/groups should reside.

Last synced: 14 May 2026

https://github.com/readdy/readdy.github.io

ReaDDy documentation

Last synced: 13 Feb 2026

https://github.com/readdy/readdy-vmd-visualizer

This tool parses ReaDDy output trajectories and creates an VMD readable output and a VMD .tcl script to visualize it.

Last synced: 11 May 2026

https://github.com/readdy/readdy2_publication_data

Last synced: 08 Oct 2025

https://github.com/readdy/custom-integrator-example

Demonstrate how to build a custom integrator for ReaDDy

Last synced: 09 Jun 2026