https://github.com/samtools/samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

Last synced: 29 Dec 2025

https://github.com/samtools/htslib

C library for high-throughput sequencing data formats

bam bcf bioinformatics cram htslib ngs sam vcf

Last synced: 29 Dec 2025

https://github.com/samtools/hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

Last synced: 07 Apr 2026

https://github.com/samtools/bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Last synced: 29 Dec 2025

https://github.com/samtools/htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

bam cram dna fasta genomics java java-api ngs sam sequencing vcf

Last synced: 14 May 2025

https://github.com/samtools/tabix

Note: tabix and bgzip binaries are now part of the HTSlib project.

Last synced: 21 Oct 2025

https://github.com/samtools/www.htslib.org

The http://www.htslib.org/ web site

Last synced: 01 Apr 2026

https://github.com/samtools/htsjdk-next-beta

Staging ground for the development of the next major version of HTSJDK

Last synced: 30 Dec 2025