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Projects in Awesome Lists by seabbs

A curated list of projects in awesome lists by seabbs .

https://github.com/seabbs/cv

Sam Abbott's Curriculum Vitae

academic-cv curriculum-vitae cv rstats travis

Last synced: 01 Jan 2025

https://github.com/seabbs/gettbinr

An R package for accessing and summarising the World Health Organisation Tuberculosis data.

binder-ready data eda package r rstats shiny tb-data tb-incidence-rates tuberculosis who world-health-organization

Last synced: 01 Jan 2025

https://github.com/seabbs/tweetrstudiocheatsheets

A Twitter bots which tweets a randomly selected Rstudio cheatsheet each day

bot docker rstats twitter

Last synced: 01 Jan 2025

https://github.com/seabbs/thesis

PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?

bcg bookdown epidemiology open-science reproducible-research rstats thesis thesisdown tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/exploreidmodels

A shiny app which allows the exploration of the dynamics of a range of simple infectious disease models

Last synced: 01 Jan 2025

https://github.com/seabbs/blogdown-site

Source code for my old personal website

academic blog hugo outreach rstats website

Last synced: 01 Jan 2025

https://github.com/seabbs/fcdashboard

Shiny dashboard for exploratory data analysis of the funding circle loanbook

dashboard exploratory-data-analysis funding-circle funding-circle-loanbook p2p p2plending plotly rstats shiny visualisation

Last synced: 01 Jan 2025

https://github.com/seabbs/tidyverse-gpu

Adding in support for GPU acceleration via CUDA to rocker/tidyverse

Last synced: 01 Jan 2025

https://github.com/seabbs/badtobetter

Better computational practice - Bad to better

best-practice tutorial

Last synced: 01 Jan 2025

https://github.com/seabbs/covidinterventionreview

Adoption and impact of non-pharmaceutical interventions for COVID-19

covid-19 interventions openscience reproducible-research rstats

Last synced: 01 Jan 2025

https://github.com/seabbs/cste-forecasting-workshop

An approachable introduction to estimating the effective reproduction number. It's meant for any and all levels of comfort with writing code

Last synced: 01 Jan 2025

https://github.com/seabbs/prettypublisher

R package to help in formatting R markdown documents into a publishable format

publishing r-package r-stats reproducible-research

Last synced: 01 Jan 2025

https://github.com/seabbs/directeffbcgpolicychange

Estimating the effect of the 2005 change in BCG policy in England: A retrospective cohort study

bcg epidemiology rstats tuberculosis united-kingdom

Last synced: 01 Jan 2025

https://github.com/seabbs/seabbs

Personal repository

Last synced: 01 Jan 2025

https://github.com/seabbs/cmmid.stan.seir

An example SEIR model implemented in stan

Last synced: 01 Jan 2025

https://github.com/seabbs/epinowcast-fixed-reporting-example

An example of how to modify epinowcast to work with fixed reporting schedules.

Last synced: 01 Jan 2025

https://github.com/seabbs/ecdc-weekly-growth-forecasts

COVID-19 cases forecasts for the ECDC Forecast Hub

Last synced: 01 Jan 2025

https://github.com/seabbs/modeltbbcgengland

Modelling Tuberculosis, including BCG vaccination, in England

bcg bcg-vaccination infectious-disease libbi model-tuberculosis rbi rstats

Last synced: 01 Jan 2025

https://github.com/seabbs/backup

Code to automate local backups of remote code

backup bash code github workflow

Last synced: 01 Jan 2025

https://github.com/seabbs/ceplotr

Model agnostic cost effectiveness plotting

cost-effectiveness cost-effectiveness-analysis plotting rstats

Last synced: 01 Jan 2025

https://github.com/seabbs/presentations

A repository containing presentations that I have given or that I am in the process of writing

Last synced: 01 Jan 2025

https://github.com/seabbs/estzoonotictb

Explore, Visualise and Estimate the Global Zoonotic Tuberculosis Burden

bovine-tb data estimation package rstats tuberculosis visualisation zoonotic-tb

Last synced: 01 Jan 2025

https://github.com/seabbs/explorebcgonoutcomes

Analysis to explore the association of BCG vaccination and TB outcomes.

bcg data-analysis regression rstats tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/regional-secondary

Prototype function for forecasting a secondary observation from a primary observation across multiple regions. An example application of this function can be found here: https://github.com/epiforecasts/covid-german-forecasts/blob/master/rt-forecast/update-death-from-cases.R. See the documentation of EpiNow2 for more details: https://epiforecasts.io/EpiNow2/dev/

Last synced: 01 Jan 2025

https://github.com/seabbs/epict

Last synced: 01 Jan 2025

https://github.com/seabbs/thepebblegame

The pebble game: A simple game that can be used to understand epidemics and vaccination

epidemics infectious-diseases mathematics outreach outreach-activities r shiny statistics vaccination

Last synced: 01 Jan 2025

https://github.com/seabbs/showmeperseus

A shiny app aiming to remove some of the potential friction for users of the rperseus package

perseus perseus-digital-library rstats shiny

Last synced: 01 Jan 2025

https://github.com/seabbs/stacktweetbot

Tools for quickly and easily creating twitter StackOverflow bots

bot r rpackage rstats stackoverflow stackoverflow-questions twitter

Last synced: 01 Jan 2025

https://github.com/seabbs/covid-climate-rt

Covid Rt estimates for evaluating the role of climate

Last synced: 01 Jan 2025

https://github.com/seabbs/tbinenglanddataclean

Cleans and Munges Tuberculosis and Demographic Data for England

data-cleaning demographics england incidence tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/dockeratfc

Presentation outlining the use of Docker for data analysis

Last synced: 01 Jan 2025

https://github.com/seabbs/etsmissing

Explore and evaluate the mechanisms for missing data in the Enhanced Tuberculosis Surveillance system.

analysis-package bcg ets public-health-england rstats surveillance tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/80-percent-good-enough

What is 80% good enough for real-time analyses during the COVID-19 pandemic

Last synced: 01 Jan 2025

https://github.com/seabbs/dotfiles

Personal dotfile and configuration

Last synced: 01 Jan 2025

https://github.com/seabbs/biddmodellingcourse-backup-server

A backup server for the BIDD Infectious Disease Modelling short course

course docker rstats swift

Last synced: 01 Jan 2025

https://github.com/seabbs/what-do-we-really-know-about-bcg

The slides for a talk given at the UK Clinical Vaccine Network Conference 2019 on the 14/06/19

bcg epidemiology open-source public-health slides talk tuberculosis vaccination

Last synced: 01 Jan 2025

https://github.com/seabbs/zopa_analysis

Analysis of P2P Loan book from Zopa

Last synced: 01 Jan 2025

https://github.com/seabbs/tb_england_wales

Dashboards visualising publicly available Tuberculosis incidence data in England and Wales

Last synced: 01 Jan 2025

https://github.com/seabbs/shinyproxy-in-docker

A Shinyproxy instance in docker

Last synced: 01 Jan 2025

https://github.com/seabbs/trendsinpapers

A simple R package to load, clean and analysis trends in publications - with TB modelling papers as an example

Last synced: 01 Jan 2025

https://github.com/seabbs/intro_to_tb_models

A shiny app recreating the models used in the practicals for the Intro to TB modelling course at the 2017 Union Conference

course docker infectious-diseases modelling shiny tb-models tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/shiny-server-templates

Customised templates for dynamically generated shiny server pages

Last synced: 01 Jan 2025

https://github.com/seabbs/myessentialr

A talk given at BristolR about my essential R resources

learning learning-by-doing rstats xaringan

Last synced: 01 Jan 2025

https://github.com/seabbs/propertypartner

Cleaning and analysis of the property partner property portfolio

Last synced: 01 Jan 2025

https://github.com/seabbs/seabbs.github.io

Personal website

Last synced: 01 Jan 2025

https://github.com/seabbs/pcr_profile

Last synced: 01 Jan 2025

https://github.com/seabbs/playingwithkeras

A collection of notebooks practising deep learning with Keras and Tensorflow

deep-learning keras learning-by-doing rstats tensorflow

Last synced: 01 Jan 2025

https://github.com/seabbs/resources

Last synced: 01 Jan 2025

https://github.com/seabbs/mfiid_course

A work through of the Introduction to model fitting in R LSTHM online course resources

Last synced: 01 Jan 2025

https://github.com/seabbs/multimodelcasestudy

Comparing approaches for combining infectious disease models using synthetic data.

Last synced: 01 Jan 2025

https://github.com/seabbs/interact-school-vs-neonatal-bcg

A shiny app to visualise the trade-offs between school age and neonatal BCG vaccination

bcg dynamic-model infectious-diseases public-health rstats shiny tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/mangotest

Mango R test for job application

Last synced: 01 Jan 2025

https://github.com/seabbs/h2ohelper

An R package containing utility functions to help with using the h2o package in R

Last synced: 01 Jan 2025

https://github.com/seabbs/jenkins-with-docker

Jenkins with Docker Docker Instance for use with my personal server

Last synced: 01 Jan 2025

https://github.com/seabbs/h2o_tweets

R code and log data for the h2o tweets twitter bot

bots cronr datascience h2o r stackoverflow twitter

Last synced: 01 Jan 2025

https://github.com/seabbs/hpru-blog-post-gettbinr

A blog post on getTBinR for the HPRU Evaluation of Interventions blog

bcg gettbinr openscience rstats tuberculosis

Last synced: 01 Jan 2025

https://github.com/seabbs/gam-uob-course

Docker container, and notebooks from the GAM workshop at the University of Bristol 26/06/18

Last synced: 01 Jan 2025

https://github.com/seabbs/forecastingglobaltb

Using WHO Tuberculosis data to forecast future incidence rates

Last synced: 01 Jan 2025

https://github.com/seabbs/funding_circle

visualisations and analysis of https://www.fundingcircle.com/uk/ loanbook

Last synced: 01 Jan 2025

https://github.com/seabbs/epinowcast-mlghw-2023

Abstract for MLGH workshop 2023

Last synced: 01 Jan 2025

https://github.com/seabbs/fc-gam-talk

Slides for a Talk introducing Generalised Additive Models and providing signposting

Last synced: 01 Jan 2025

https://github.com/seabbs/benchmark-libbi

Benchmarking Libbi using CPUs and GPUs for infectious disease modelling

Last synced: 01 Jan 2025

https://github.com/seabbs/analysisskeleton

A repository containing an analysis skeleton based around an R package framework

Last synced: 01 Jan 2025

https://github.com/seabbs/covid-uk-1

Scenario analyses for COVID-19 outbreaks in the United Kingdom

Last synced: 01 Jan 2025