Projects in Awesome Lists by seqan
A curated list of projects in awesome lists by seqan .
https://github.com/seqan/seqan
SeqAn's official repository.
alignment bioinfomatics blast bwt cpp14 fasta fastq-format high-performance htslib indexing sam-bam seqan sequence-alignments simd suffixarray
Last synced: 15 May 2025
https://github.com/seqan/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
bioinformatics blast cpp-concepts cpp20 fasta fastq fm-index modern samtools seqan sequence-alignment sequence-analysis
Last synced: 01 Mar 2026
https://github.com/seqan/lambda
LAMBDA – the Local Aligner for Massive Biological DatA
alignment bioinformatics blast blast-searches high-performance metagenomics ncbi-taxonomy protein-sequences seqan
Last synced: 28 Feb 2025
https://github.com/seqan/raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
binning bloom-filter filter k-mer minimizer set-membership threshold
Last synced: 09 Apr 2025
https://github.com/seqan/slimm
Species Level Identification of Microbes from Metagenomes
Last synced: 09 Apr 2025
https://github.com/seqan/needle
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
bloom-filters ibf minimizer ngs-data seqan3
Last synced: 09 Apr 2025
https://github.com/seqan/sharg-parser
The modern argument parser for c++ tools
argument-parsing command-line-parser cpp cpp20 modern-cpp
Last synced: 11 Aug 2025
https://github.com/seqan/igenvar
The official repository for the iGenVar project.
Last synced: 03 Aug 2025
https://github.com/seqan/chopper
A tool for partitioning a set of sequences into similar batches.
Last synced: 09 Apr 2025
https://github.com/seqan/anise_basil
Methods for the detection and assembly of novel sequence in high-throughput sequencing data
Last synced: 07 Mar 2026
https://github.com/seqan/seqan3-doc
All the scripts for generating API docs on ReadTheDocs
Last synced: 09 Apr 2025
https://github.com/seqan/app-template
This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.
Last synced: 14 Oct 2025
https://github.com/seqan/learning-resources
Provides online material and tutorials for modern C++, efficient data structures and algorithms.
Last synced: 17 Jul 2025
https://github.com/seqan/lemon
Clone of the latest release of the lemon library (only the headers)
Last synced: 07 Sep 2025
https://github.com/seqan/knime_seqan_workflows
KNIME example workflows for NGS data analysis with SeqAn apps.
Last synced: 15 Feb 2026
https://github.com/seqan/lara
LaRA 2: Lagrangian Relaxed structural Alignment
alignment bioinformatics rna rna-structure
Last synced: 22 Jul 2025
https://github.com/seqan/product_backlog
This repository is used as product backlog for all SeqAn relevant backlog items. This is intended to organise the work for the team.
Last synced: 19 Mar 2026
https://github.com/seqan/sahara
Approximate Pattern Matching with Search Schemes
Last synced: 13 Jun 2026
https://github.com/seqan/minions
Comparison between different methods to simplify sequence data
k-mer minimizer set-membership
Last synced: 21 Sep 2025
https://github.com/seqan/dream_yara
DREAM-Yara - An exact read mapper for very large databases with short update time
Last synced: 18 Apr 2026
https://github.com/seqan/seqan3-infrastructure
Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.
Last synced: 19 Mar 2026
https://github.com/seqan/ibf-fpga
Mirror of https://git.zib.de/hpc-research/Projects/seqanatfpga/min-ibf-fpga-oneapi
Last synced: 07 May 2025
https://github.com/seqan/seqan_knime_plugin
Build infrastructure for the seqan KNIME plugin
Last synced: 08 May 2026
https://github.com/seqan/seqan3-manual
SeqAn3 manual source, manual build utils, manual code snippets and tests for the manual code snippets.
Last synced: 07 Mar 2026
https://github.com/seqan/mars
Motif-based aligned RNA searcher
descriptors motif rna-structure
Last synced: 14 Sep 2025
https://github.com/seqan/release_scripts
Scripts for building app and library packages and publishing of http://packages.seqan.de
Last synced: 04 Oct 2025
https://github.com/seqan/pfbitvectors
paired-blocks and flattened bitvectors and strings with rank support implementations.
Last synced: 05 Sep 2025
https://github.com/seqan/seqan_bench_code
SeqAn Benchmark Suite [source code]
Last synced: 06 Jun 2026