Projects in Awesome Lists by sing-group
A curated list of projects in awesome lists by sing-group .
https://github.com/sing-group/deep-learning-colonoscopy
Review in Deep Learning for Polyp Detection and Classification in Colonoscopy (https://doi.org/10.1016/j.neucom.2020.02.123).
colonoscopy deep-learning deep-neural-networks
Last synced: 06 Feb 2026
https://github.com/sing-group/gc4s
GUI Components for (Java) Swing
gui gui-components java library swing
Last synced: 03 Jul 2025
https://github.com/sing-group/biojs-vis-blasterjs
BlasterJS - an open source JS library to display Blast results
biojs blast blast-output-viewer bootstrap html2canvas javascript npm
Last synced: 13 May 2025
https://github.com/sing-group/aibench-project
The SING Java Framework for Scientific Apps
java-framework java-swing-applications scientific-computing software-development
Last synced: 03 Jul 2025
https://github.com/sing-group/my-brain-seq
myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry
compi differential-expression docker mirna mirna-seq pipeline
Last synced: 23 Feb 2026
https://github.com/sing-group/public-datasets-to-voc
Scripts for converting public polyp datasets to the PASCAL VOC format.
Last synced: 03 Jul 2025
https://github.com/sing-group/bicycle
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
bisulfite bisulfite-sequencing cli dna-methylation java java-bioinformatics methylation
Last synced: 03 Jul 2025
https://github.com/sing-group/alter
ALignment Transformation EnviRonment
alignment-files format-conversion-tool format-converter java java-bioinformatics phylogenetics
Last synced: 03 Jul 2025
https://github.com/sing-group/bdp4j
Big Data Pipelining For Java
java-8 pipeline pipeline-framework
Last synced: 03 Jul 2025
https://github.com/sing-group/compi
Java Framework for Computational Pipelines
cli-application computational-pipelines java-framework pipeline pipeline-framework workflow-engine
Last synced: 03 Jul 2025
https://github.com/sing-group/pandrugs-docker
A Dockerfile to generate an all-in-one pandrugs server
Last synced: 03 Jul 2025
https://github.com/sing-group/seda
SEquence DAtaset builder
bioinformatics fasta fasta-sequences java sequence-dataset-builder sequences
Last synced: 03 Jul 2025
https://github.com/sing-group/pandrugs-frontend
An AngularJS frontend for the PanDrugs application
bioinformatics cancer database drugs personal-medicine
Last synced: 03 Jul 2025
https://github.com/sing-group/pandrugs-backend
A Java backend for the PanDrugs application
bioinformatics cancer database drugs personal-medicine
Last synced: 18 Feb 2026
https://github.com/sing-group/dewe
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
aibench differential-expression java rna-seq rna-seq-data rna-seq-pipeline
Last synced: 03 Jul 2025
https://github.com/sing-group/mass-spectrometry-peak-matching
R implementation of the "Forward" peak matching algorithm implemented in Mass-Up (https://www.sing-group.org/mass-up/, https://doi.org/10.1186/s12859-015-0752-4)
Last synced: 03 Jul 2025
https://github.com/sing-group/s2p
S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.
maldi-tof-mass-spectrometry maldi-tof-ms mass-spectrometry proteins
Last synced: 04 Feb 2026
https://github.com/sing-group/bdbm
BLAST DataBase Manager
bioinformatics blast emboss genome genome-annotation java java-bioinformatics repository-management sequence transcriptome
Last synced: 25 Jul 2025
https://github.com/sing-group/discoverregex
Automatic Generator of Regular Expressions.
genetic-algorithm regular-expressions spam-detection spam-filtering
Last synced: 14 Jul 2025
https://github.com/sing-group/la-images
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
3d elemental-distribution icp-ms java java-bioinformatics laser-ablation mass-spectrometry
Last synced: 29 Oct 2025
https://github.com/sing-group/r-rsc-statistics-data-mining
Source code for the book chapter about Statistics, Data Mining and Modeling.
data-mining machine-learning mass-spectrometry mass-spectrometry-data proteomics r-programming
Last synced: 03 Jul 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2020-2021
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2020-2021)"
Last synced: 03 Jul 2025
https://github.com/sing-group/livia-core
LIve VIdeo Analysis framework (core)
Last synced: 30 Jun 2026
https://github.com/sing-group/bew
Public repository for Biofilmfs Experiment Workbench (BEW).
aibench data-analysis data-management java jfreechart workbench
Last synced: 03 Jul 2025
https://github.com/sing-group/seda-compi-pipelines
This project provides a framework for easily creating pipelines of SEDA commands using Compi.
Last synced: 11 Aug 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2022-2023
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2022-2023)"
Last synced: 24 Oct 2025
https://github.com/sing-group/uniprot-id-mapping
UniProt ID Mapping in Java
Last synced: 30 Jun 2026
https://github.com/sing-group/markyt
Markyt is a Web-based multi-purpose annotation tool.
agreement annotation-framework html java php relation-annotation web
Last synced: 20 Apr 2026
https://github.com/sing-group/compi-blast-example
A Compi pipeline based on the Nextflow blast-example: https://github.com/nextflow-io/blast-example
Last synced: 03 Feb 2026
https://github.com/sing-group/conceptdriftanalyser
Perl Tool to Analyze and Detect Concept Drift in Spam E-mails
Last synced: 03 Jul 2025
https://github.com/sing-group/warcprocessor
WARCProcessor is a platform independent integrative tool providing specific support to scientists that need to perform experiments in the field of web spam research.
Last synced: 03 Jul 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2023-2024
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2023-2024)
Last synced: 03 Jul 2025
https://github.com/sing-group/seda-blast-plugin
BLAST plugin for SEDA application
Last synced: 03 Jul 2025
https://github.com/sing-group/evoppi-backend
Backend for the EvoPPI application
comparative-analysis interactome protein-protein protein-protein-interaction web-application
Last synced: 03 Jul 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2024-2025
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2024-2025)
Last synced: 01 Aug 2025
https://github.com/sing-group/evoppi-frontend
Front-end for the EvoPPI application
interactome protein-protein protein-protein-interaction web-application
Last synced: 26 Jul 2025
https://github.com/sing-group/yacli
yast another Command Line Interface library
Last synced: 03 Jul 2025
https://github.com/sing-group/adops
Automatic Detection of Positively Selected Sites
biooinformatics codeml fasta java java-bioinformatics mrbayes phylogenetic-trees phylogenetics positive-selection
Last synced: 03 Jul 2025
https://github.com/sing-group/bdp4j_sample
BPP4J (Big Data Preprocessing for Java) usage example.
java-8 pipeline pipeline-framework
Last synced: 26 Jul 2025
https://github.com/sing-group/mtc-games-demo
MultiTaking Cubes - Games Demo
Last synced: 03 Jul 2025
https://github.com/sing-group/moea4sdr
Multi-Objective Evolutioary Algorithms for Synset Dimensionality Reduction
Last synced: 03 Jul 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2021-2022
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2021-2022)"
Last synced: 03 Jul 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2019-2020
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2019-2020)"
Last synced: 03 Jul 2026
https://github.com/sing-group/dreimt-database
DREIMT Database Processing project.
Last synced: 03 Jul 2025
https://github.com/sing-group/java-phylogenetic-tree-collapser
A Java program to collapse phylogenetic trees in Newick format.
Last synced: 03 Jul 2025
https://github.com/sing-group/dreimt-utils
Utilities for the DREIMT project.
Last synced: 02 Feb 2026
https://github.com/sing-group/nlpa
Natural Language Pre-processing Architecture
Last synced: 03 Jul 2026
https://github.com/sing-group/compi-convenience-scripts
A repository with convenience scripts for Compi (https://www.sing-group.org/compi/)
Last synced: 03 Jul 2025
https://github.com/sing-group/aibench-debian-package
AIBench sample configuration for DEB package generation
Last synced: 03 Jul 2025
https://github.com/sing-group/dreimt-backend
A Java backend for the DREIMT application
drug-repositioning immune-system transcriptomics
Last synced: 03 Jul 2025
https://github.com/sing-group/evoppi-docker
Docker compose project for deploying EvoPPI in a Docker environment.
Last synced: 07 Sep 2025
https://github.com/sing-group/bpositive
B+ A database of Positively Selected Sites discovered with ADOPS
adops database evolutionary-biology positive-selection repository
Last synced: 09 Oct 2025
https://github.com/sing-group/metatax
Metatax: Metataxonomics with a Compi-based pipeline for Precision Medicine
Last synced: 01 Feb 2026
https://github.com/sing-group/compi-module-docker-management
A Compi DK module for Docker images management
Last synced: 22 Jul 2026
https://github.com/sing-group/whichgenes
Bioinformatics gene set building tool. It allows the user to create and manage custom genesets extracted from several sources.
Last synced: 08 Jul 2026
https://github.com/sing-group/dreimt-frontend
An Angular 9 frontend for the DREIMT application
drug-repositioning immune-system transcriptomics
Last synced: 30 Aug 2025
https://github.com/sing-group/run-pathfindr
An R script to run the pathfindR enrichment workflow
Last synced: 03 Jul 2025
https://github.com/sing-group/compi-rnaseq-pipeline
A compi RNA-Seq pipeline to perform differential expression.
compi differential-expression pipeline rna-seq
Last synced: 03 Jul 2025
https://github.com/sing-group/cfr-vigo-ti-2025-ml
Cadernos de aprendizaxe automática para o curso sobre "Tecnoloxías Intelixentes" no CFR de Vigo (Xaneiro de 2025)
Last synced: 03 Jul 2025
https://github.com/sing-group/master-bioinformatica-aplicada-2018-2019
Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2018-2019)"
Last synced: 11 Aug 2025