Projects in Awesome Lists by solida-core
A curated list of projects in awesome lists by solida-core .
https://github.com/solida-core/solida
SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
ansible ngs ngs-pipeline pipeline python reproducibility snakemake workflow yaml
Last synced: 23 Apr 2025
https://github.com/solida-core/diva
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
bioinformatics genomics snakemake variant-annotations variant-calling workflow
Last synced: 12 Apr 2025
https://github.com/solida-core/dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
bioinformatics genomics ngs-pipeline snakemake snakemake-workflows workflows
Last synced: 16 Feb 2026
https://github.com/solida-core/toolkit
DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes
Last synced: 07 Nov 2025
https://github.com/solida-core/niasmic
Non Invasive Analysis of Somatic Mutations in Cancer
Last synced: 07 Nov 2025
https://github.com/solida-core/musta
MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer
Last synced: 23 Aug 2025
https://github.com/solida-core/astra
Snakemake pipeline to performs Variant Calling (with DeepVariant) and Variant Annotation (with VEP) starting from tumor BAM files.
Last synced: 15 Jun 2025
https://github.com/solida-core/ride
bioinformatics genomics rna-seq-analysis snakemake
Last synced: 04 Jan 2026
https://github.com/solida-core/solida-view
Dockerized version of Panoptes, a powerful tool for monitoring the execution of Snakemake workflows.
Last synced: 16 Jul 2025
https://github.com/solida-core/solida-gui
Container Docker application that facilitate the solida usage, via a friendly GUI
Last synced: 12 Feb 2026
https://github.com/solida-core/sride
Snakemake enabled pipeline for smallRNA-Seq identification
Last synced: 15 Jul 2025
https://github.com/solida-core/test-data-dna
A repository with test data for DNA analysis pipelines
Last synced: 25 Jan 2026