Projects in Awesome Lists by supermaxiste
A curated list of projects in awesome lists by supermaxiste .
https://github.com/supermaxiste/arpeggio
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
allopolyploid automation bisulfite-sequencing dna-methylation epigenetics plants reproducibility snakemake whole-genome-sequencing workflow
Last synced: 17 Mar 2025
https://github.com/supermaxiste/environmentalstresspolyploidevolution
This repository includes all the analyses related to the influence of environment in the early stages of evolution in the synthetic polyploid species Arabidopsis kamchatica
bioinformatics evolution plants polyloidy publication-code reproducibility reproducible-research rna-seq rna-seq-analysis whole-genome-bisulfite-sequencing
Last synced: 16 May 2025
https://github.com/supermaxiste/arpeggio_paperanalyses
All the scripts used to evaluate EAGLE_RC and run ARPEGGIO on example datasets, from the official ARPEGGIO paper
Last synced: 04 Apr 2025
https://github.com/supermaxiste/sphn_framework_testing
This repository includes the steps to complete a task related to semantization of clinical data within the SPHN framework
Last synced: 04 Apr 2025
https://github.com/supermaxiste/remappingassemblies
We would like to improve our assemblies by mapping them to another (almost) chromosome-level assembly.
Last synced: 04 Apr 2025