Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by theislab
A curated list of projects in awesome lists by theislab .
https://github.com/theislab/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Last synced: 28 Dec 2024
https://github.com/theislab/single-cell-best-practices
https://www.sc-best-practices.org
book rna-seq single-cell tutorial
Last synced: 12 Nov 2024
https://github.com/theislab/cellrank
CellRank: dynamics from multi-view single-cell data
bioinformatics cell-fate-determination cell-fate-transitions data-science fuzzy-clustering-analyses genetics machine-learning manifold-learning markov-chains rna-velocity single-cell-genomics single-cell-rna-seq trajectory-generation
Last synced: 12 Nov 2024
https://github.com/theislab/scarches
Reference mapping for single-cell genomics
batch-correction data-integration deep-learning human-cell-atlas multimodal-deep-learning multiomics rna-seq-analysis scrna-seq single-cell single-cell-genomics
Last synced: 28 Nov 2024
https://github.com/theislab/anndata2ri
Convert between AnnData and SingleCellExperiment
bioconductor jupyter rpy2 scanpy single-cell
Last synced: 29 Dec 2024
https://github.com/theislab/ehrapy
Electronic Health Record Analysis with Python.
ehr electronic-health-record electronic-medical-record scverse
Last synced: 12 Nov 2024
https://github.com/theislab/ncem
Learning cell communication from spatial graphs of cells
cell-cell-communication cell-cell-interaction cvae encoder-decoder-model glm gnn scanpy squidpy tensorflow
Last synced: 12 Nov 2024
https://github.com/theislab/destiny
R package for single cell and other data analysis using diffusion maps
diffusion-maps dimensionality-reduction r
Last synced: 30 Dec 2024
https://github.com/theislab/graphcompass
GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
Last synced: 15 Oct 2024
https://github.com/theislab/kbranches
Finding branching events and tips in single cell differentiation trajectories
Last synced: 06 Nov 2024