Projects in Awesome Lists by tripal

https://github.com/tripal/tripal

The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.

biological-data chado cms-extension drupal hacktoberfest tripal tripal-core

Last synced: 16 May 2025

https://github.com/tripal/tripal_jbrowse

Drupal/Tripal: Drupal integration for GMOD JBrowse instances.

genome hacktoberfest integration jbrowse tripal visualization

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_synview

synteny viewer

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_elasticsearch

chado elasticsearch integration search tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_blast

Provides an user interface to BLAST on Tripal sites.

hacktoberfest integration ncbi-blast tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_analysis_expression

Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.

analysis chado gene-expression loader tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripaltestsuite

Handle drupal bootstrapping, load environment variables, and easily wrap your tests in DB transactions.

database-seeder drupal tripal tripal-developer-tools tripal3 unittest

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_remote_job

A Tripal module, Tripal Remote Job can be used to launch jobs on external/remote servers to avoid overloading the webserver.

tripal

Last synced: 09 Apr 2025

https://github.com/tripal/tripald3

provides an API for developing consistent biological diagrams with a common configuration, as well as, providing some common diagrams such as pie, bar, column and pedigree diagrams.

api d3js tripal tripal3-compatible visualization

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_install

Tripal Install Profiles

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_analysis_kegg

This module extends the Tripal Analysis Module and provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). The module reads the compressed .heir file or alternatively an expanded heir directory. KEGG assignments appear on each feature page, and a full KEGG report is available for browsing results once uploaded.

analysis kegg-ortholog loader tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_bam_store

Provides a field storage implementation for BAM files.

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_sequence_similarity_search

This module supports sequence similarity search on a Tripal website through a new dual application option. The Tripal module provides access to the speed increase available through Diamond for BLASTP/BLASTX style searches as well as traditional NCBI BLAST for BLASTN. Both applications are integrated into a single interface that provides file upload or copy/paste sequence support for the query and access to formatted databases for NCBI BLAST or Diamond. The target databases can be customized for the categories of whole genome, gene, protein, and transcriptome/unigene. The administration interface allows the admin user to set what pre-indexed databases are available (which show up in a dropdown menu). The module supports execution of the searches on a remote machine so that the search is not running directly on the limited resources typically associated with web servers.

Last synced: 26 Mar 2025

https://github.com/tripal/mainlab_tripal

Mainlab Tripal Data Display: extending the display of a Tripal database

main-lab theme tripal

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_doc

Official Documentation for the Tripal Platform

documentation-site hacktoberfest tripal tripal-core tripal4

Last synced: 09 Apr 2025

https://github.com/tripal/trpdownload_api

An API for implementing download functionality.

api export tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_galaxy

This module is for integration of Tripal and a remote Galaxy Instance.

galaxy-project integration tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_go

go enrichment for tripal

Last synced: 09 Apr 2025

https://github.com/tripal/chado_search

Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database

chado main-lab search tripal

Last synced: 09 Apr 2025

https://github.com/tripal/mainlab_chado_loader

Mainlab Chado Loader

chado loader main-lab tripal

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_analysis_blast

This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.

hacktoberfest integration ncbi-blast tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_analysis_go

This module is responsible for displaying reports from Gene Ontology (GO) analyses. This module contains a Gene Ontology Annotation Format (GAF) file loader to import GO terms assigned to features. Otherwise, GO assignments must already be loaded into the Tripal database using other data loaders (e.g. using the Tripal InterPro Analysis module or a GFF file)

analysis gene-ontology loader tripal

Last synced: 05 Apr 2025

https://github.com/tripal/trpfancy_fields

Provide additional fields to jazz up your Tripal Content Pages!

tripal

Last synced: 05 Apr 2025

https://github.com/tripal/tripal_analysis_interpro

This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.

analysis interproscan-xml loader tripal

Last synced: 05 Apr 2025

https://github.com/tripal/fields_generator

A composer tool for easily generating Tripal Fields

composer tripal tripal-developer-tools tripal3

Last synced: 06 Apr 2025

https://github.com/tripal/t4d8

This is a temporary repository for Drupal 9 upgrade for Tripal v4. It is meant to house issues related to the upgrade.

drupal9 hacktoberfest tripal tripal4

Last synced: 11 Feb 2025

https://github.com/tripal/tripal4_services_proof-of-concept

Experimental code for a services-driven approach to Tripal 4

Last synced: 05 Apr 2025

https://github.com/tripal/private_biodata

Make individual pages private while others of the same Tripal Content Type remain public!

access-control tripal tripal3

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_simpletest

This module can be used to develop functional tests on Tripal extensions that can be run on an existing site without disturbing its content. It's compatible with Drupal native test system.

testing tripal

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_file

Manages site-wide files and associates them with content in a Tripal site.

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_network

Provides Tripal integration of biological networks including storage, loaders and visualzations

biological-networks loader tripal visualization

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_genetic

Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.

biological-data chado genetic-variation tripal-core tripal4

Last synced: 09 Apr 2025

https://github.com/tripal/docker-tripal-centos

Docker container for Tripal 2 and Tripal 3

deprecated docker-container-tripal tripal-v2 tripal-v3

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_pathway

pathway enrichment analysis

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_apollo

Integration of Tripal with Apollo

apollo integration tripal

Last synced: 09 Apr 2025

https://github.com/tripal/brapi

Breeding API client-server implementation (v1 & v2) for Tripal

Last synced: 09 Apr 2025

https://github.com/tripal/setup-tripal-action

Provides a GitHub Action to setup a basic Tripal site in your GitHub Action Workflows.

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_scidas

Integration of Tripal with the SciDAS Nextflow API

Last synced: 09 Apr 2025

https://github.com/tripal/tripal_analysis_unigene

DEPRECATED. This module is no longer needed for Tripal v3. Only major bug fixes will be considered for Tripal v2 sites that still use it. But, in summary, This module extends the Tripal v2 Analysis Module and provides visualization of Unigenes derived from ESTs.

analysis tripal unigenes

Last synced: 09 Apr 2025