Projects in Awesome Lists by yhoogstrate
A curated list of projects in awesome lists by yhoogstrate .
https://github.com/yhoogstrate/fastafs
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
2bit compression dna-sequences fasta filesystem fuse-filesystem
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/bam-lorenz-coverage
Generate Lorenz plots and Coverage plots directly from BAM files
dna-seq ginicoverage lorenz ngs quality-control rna-seq wgs
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/flaimapper
:honeybee: Fragment Location Annotation Identification Mapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/fuma
:dash::leopard: FuMa: reporting overlap in RNA-seq detected fusion genes
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/recursivecorplot
Recursive correlation based natural clustering (using ggplot, labels and historgrams)
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/pymnp
Python 3 API and batch downloader/re-runner for the MolecularNeuropathology brain classifier
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/dr-disco
:mask::loudspeaker: Dr. Disco: detecting genomic breakpoints of fusion transcripts in random hexamer RNA-seq data
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/egfr-v3-determiner
Free open-source tool to extract counts of spliced EGFR vIII / EGFR non-vIII (wt) reads
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/scrna-glioma-project
single-cell and single-nucleus RNA-seq analysis of public data
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/idat-tools
Application to mix idat files (e.g. tumor with normal)
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/fibronectin-splice-variant-detector
fibronectin-splice-variant-detector
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/bio-kernel
Official landing place of the bio-kernel project
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/tacc3-fgfr3-bam-quick-scanner
Quick scan for reads mapped to both TACC3 and FGFR3 in order to find fusions
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/snoekdobber3d
3D printer modellen voor snoekdobbers
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/segmentation-fold
:triangular_ruler: segmentation-fold: RNA folding including K-turns
Last synced: 20 Jan 2025
https://github.com/yhoogstrate/disc-art
Disc-Art - some kind of omics artifact analyser
Last synced: 20 Jan 2025