https://github.com/dockstore/dockstore-training

Working space for creating dockstore training materials

cwl docker nextflow wdl

Last synced: 10 Mar 2025

https://github.com/GusEllerm/GIS_IndexGen

Prototype implementation of LivePaper with GIS indices as the subject.

cwl cwl-workflow gis livedata livepaper remote-sensing

Last synced: 10 Mar 2025

https://github.com/emulation-as-a-service/cwl-action

cwl

Last synced: 10 Mar 2025

https://github.com/beroukhim-lab/GATK_CN_CWL

Implementation of the GATK copy number pipeline in CWL (ported from WDL)

cnv cwl gatk gdc wdl

Last synced: 10 Mar 2025

https://github.com/nanxstats/cwl-upgrader

Shiny app to upgrade Common Workflow Language (CWL) apps from sbg:draft2 to v1.0

bioinformatics common-workflow-language cwl reticulate shiny-apps

Last synced: 11 Mar 2025

https://github.com/nci-gdc/samtools-mpileup-cwl

CWL for GDC samtools mpileup

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/mattdoug604/help-to-cwl

Automatically generate a bare-bones CWL tool for your program of interest.

cwl python

Last synced: 22 Feb 2025

https://github.com/gusellerm/gis_indexgen

Prototype implementation of LivePaper with GIS indices as the subject.

cwl cwl-workflow gis livedata livepaper remote-sensing

Last synced: 20 Mar 2025

https://github.com/stevekm/toil-elk

Template for running Toil on LSF HPC with ELK stack logging

cwl cwl-workflow elasticsearch elk-stack filebeat hpc logstash lsf toil

Last synced: 03 Mar 2025

https://github.com/ktaletsk/cwl-examples

common-workflow-language commonwl cromwell cwl

Last synced: 20 Feb 2025

https://github.com/bernddoser/ml-workflow-orchestration

Seminar: Machine Learning Workflow Orchestration

cwl flyte machine-learning workflow

Last synced: 02 Apr 2025

https://github.com/COV-IRT/d3b-dev-rnaseq-snv

RNAseq SNV Calling Workflow (beta)

cwl rnaseq workflows

Last synced: 10 Mar 2025

https://github.com/nci-gdc/mutect2-cwl

CWL for GDC GATK3 MuTect2

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/gatk4_mutect2_cwl

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/vep-cwl

GDC VEP Variant Annotation Workflow

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/muse-cwl

CWL for GDC MuSE

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/gdc_tosvc_workflow

GDC Tumor-only Somatic Variant Calling Workflow

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/somaticsniper-cwl

CWL for GDC SomaticSniper

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/gdc-mirnaseq-cwl

CWL workflows and tools for the miRNA-Seq workflow

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/gdc-sanger-somatic-cwl

CWL Workflows for the Sanger Somatic Workflow

bioinformatics cwl workflow

Last synced: 21 Feb 2025

https://github.com/nci-gdc/aliquot-maf-cwl

CWL tools and workflows for generating and processing aliquot-MAF

bioinformatics cwl maf-files workflow

Last synced: 21 Feb 2025

https://github.com/nanxstats/cwl-exploder

Shiny app to unpack monolithic CWL workflows

bioinformatics common-workflow-language cwl reticulate shiny-apps

Last synced: 11 Mar 2025

https://github.com/fpsom/intro-to-cwl-docker

Introduction to CWL and Docker

cwl docker training

Last synced: 19 Feb 2025