awesome-genome-visualization
A list of interesting genome browser and genome visualization programs
https://github.com/cmdcolin/awesome-genome-visualization
Last synced: 17 days ago
JSON representation
Academic license
Alignments
- GenomeView (java app) - genome-visualization/genomeview_java.png)
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- Chromatic - genome-visualization/chromatic.png)
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- Gambit - genome-visualization/gambit.png)
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- LookSeq - genome-visualization/lookseq.png)
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- Staden - genome-visualization/staden.png)
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- alignoth - genome-visualization/alignoth.png)
- bamscope - genome-visualization/bamscope.png)
- DrukBam - genome-visualization/drukbam.png)
- gw - genome-visualization/gw.png)
- Hawkeye - genome-visualization/hawkeye.png)
- MagicViewer - genome-visualization/magicviewer.jpeg)
- NGB - genome-visualization/ngb.png)
- pyBamView - genome-visualization/pybamview.png)
- udon - genome-visualization/udon.png)
- wally - genome-visualization/wally.png)
- MapView - genome-visualization/mapview.jpg)
- MapView - genome-visualization/mapview.jpg)
Alignments viewer
Annotation
Assembly
Assembly QC
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- vega
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- ALVIS (chimeric alignment viewer) - genome-visualization/alvis_chimeric.png)
- Consed - genome-visualization/consed.png)
- vega - genome-visualization/vega.png)
- Icarus QUAST - genome-visualization/icarus.png)
- MIRA - genome-visualization/mira.png)
- Genome Puzzle Master (GPM) - genome-visualization/gpm.png)
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based
- Rna Alignment Viewers (Colorstock, SScolor, Ratón) - genome-visualization/rnaalignment.png)
- Alan - genome-visualization/alan.png)
- Alv - genome-visualization/alv.png)
- ASCIIGenome - genome-visualization/asciigenome.png)
- Bamcov - genome-visualization/bamcov.png)
- Hapviz - genome-visualization/hapviz.png)
- pileuppy - genome-visualization/pileuppy.png)
- rich-msa - genome-visualization/richmsa.png)
- Sam2pairwise
- Samtools tview - genome-visualization/tview.png)
- SeqSizzle - genome-visualization/seqsizzle.png)
- SvABA - genome-visualization/svaba.png)
- VizAln (from HipSTR) - genome-visualization/hipstr.png)
- wgatools - genome-visualization/wgatools.png)
BLAST
- SequenceServer - genome-visualization/sequenceserver.png)
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Chromosome painting
Circular
- Anvio
- BioCircos.js
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- Circleator
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- Circos - genome-visualization/circos.png)
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- GenomeProjector - genome-visualization/glanguage.jpg)
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- OGDRAW - genome-visualization/ogdraw.png)
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- Gview
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- RegulomeExplorer
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- OmicCircos - genome-visualization/omiccircos.png)
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- BRICK (BRIG-like circular knowledgebase) - genome-visualization/brick.png)
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- RegulomeExplorer - genome-visualization/cancerregulome.png)
- BioCircos.js - genome-visualization/biocircos.png)
- Circleator - genome-visualization/circleator.png)
- circlize - genome-visualization/circlize.jpeg)
- CircosJS - genome-visualization/circosjs.png)
- circularMT - genome-visualization/circularmt.png)
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- genoVi - genome-visualization/genovi.png)
- Gview - genome-visualization/gview.png)
- JupiterPlot - genome-visualization/jupiterplot.png)
- pyCirclize - genome-visualization/pycirclize.png)
- pyCircos - genome-visualization/pycircos.png)
- CGView - genome-visualization/cgview.png)
- CGView.js - genome-visualization/cgviewjs.png)
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CNV
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- CNVkit - genome-visualization/cnvkit.png)
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- GenomeSpy - genome-visualization/genomespy.png)
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- GenomePaint
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- bcftools cnv - genome-visualization/bcftools_cnv.png)
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- genevisR - genome-visualization/genevisr.png)
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- SnoopCGH
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- Genovar
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- CNANorm - genome-visualization/cnanorm.png)
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- SFARI - genome-visualization/sfari.jpg)
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- CoveragePlotter
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- aCNVViewer - genome-visualization/acnvviewer.png)
- BAMScale - genome-visualization/bamscale.png)
- CNSpector - genome-visualization/cnspector.png)
- CoveragePlotter - chromosome) (img)
- covviz - genome-visualization/covviz.png)
- genome_coverage_plotter - genome-visualization/genome-coverage-plotter.png)
- mocha - genome-visualization/mocha.png)
- SeeNV - genome-visualization/seenv.png)
- Genovar - genome-visualization/genovar.png)
- SnoopCGH - genome-visualization/snoopcgh.jpg)
- GenomePaint - genome-visualization/genomepaint.png)
Commercial
- 10x genomics - Loupe - genome-visualization/10xgenomics.png)
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- Alamut
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- ATCC Genome Portal - genome-visualization/atcc.png)
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- Benchling - genome-visualization/benchling.png)
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- CLC Genomics workbench - genome-visualization/clcgenomics.png)
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- DNASTAR - genome-visualization/dnastar.png)
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- Geneious - genome-visualization/geneious.png)
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- Golden Helix - genome-visualization/goldenhelix.png)
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- MacVector - genome-visualization/macvector.png)
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- Persephone - genome-visualization/persephone.jpg)
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- SnapGene - genome-visualization/snapgene.png)
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- Strand NGS - genome-visualization/strandngs.png)
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- Bionano
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- ERGO - genome-visualization/ergo.png)
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- Circa
- Bionano
- Circa
