awesome-genome-visualization

A list of interesting genome browser and genome visualization programs
https://github.com/cmdcolin/awesome-genome-visualization

Last synced: 10 days ago
JSON representation

Commercial
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- ERGO - genome-visualization/ergo.png)
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- Circa
- Bionano
- Circa
- Alamut - genome-visualization/alamut.png)
- Bionano - genome-visualization/bionano.png)
- Circa - genome-visualization/circa.png)
- Genestack - genome-visualization/genestack.png)
- Lucid viewer - genome-visualization/lucidalign.png)
Comparative
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- AliTV - genome-visualization/alitv.png)
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- Biodalliance comparative demo
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- CoGe - genome-visualization/coge.png)
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- Comparative assembly hub / "snake track"
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- CVit - genome-visualization/cvit.png)
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- Genome Context Viewer - genome-visualization/genome_context_viewer.png)
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- Genomicus - genome-visualization/genomicus.png)
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- MizBee - genome-visualization/mizbee.jpg)
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- Multiple genome viewer
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- OMA local synteny browser - genome-visualization/oma.png)
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- Parasight - genome-visualization/parasight.png)
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- SyMap
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- SynTView - genome-visualization/syntview.png)
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- SynVisio - genome-visualization/synvisio.png)
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- XMatchView - genome-visualization/xmatchview.png)
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- PipMaker
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- miropeats
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- chromoMap - genome-visualization/chromomap.png)
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- SimpleSynteny - genome-visualization/simplesynteny.jpg)
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- Cinteny
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- AutoGraph
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- EvolutionHighway - fb/syntenyPlotteR, paper https://doi.org/10.1126/science.1111387) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/evolutionaryhighway.jpg)
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- SyntenyPortal
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- SequenceSurveyor - genome-visualization/sequencesurveyor.png)
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- PSAT
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- TreeBrowser (MicrobesOnline)
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- GenomicBreaks - genome-visualization/genomicbreaks.png)
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- CrowsNest - genome-visualization/crowsnest.png)
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- AccuSyn - genome-visualization/accusyn.png)
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- PSAT - genome-visualization/psat.png)
- NCBI CGV - genome-visualization/cgv.png)
- syntR - genome-visualization/syntr.png)
- PSAT - genome-visualization/psat.png)
- PSAT - genome-visualization/psat.png)
- PSAT - genome-visualization/psat.png)
- PSAT - genome-visualization/psat.png)
- PSAT - genome-visualization/psat.png)
- PSAT
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- PSAT
- PSAT
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- GenomeMatcher
- PSAT
- ntSynt
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- PSAT
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- PSAT
- Aequatus - genome-visualization/aequatus.png)
- asynt - genome-visualization/asynt.png)
- Biodalliance comparative demo - genome-visualization/biodalliance_comparative.png)
- Chromatiblock - genome-visualization/chromatiblock.png)
- CHROMEISTER - genome-visualization/chromeister.png)
- chromsyn - genome-visualization/chromsyn.png)
- Cinteny - genome-visualization/cinteny.png)
- clinker - genome-visualization/clinker.png)
- CrossBrowse - genome-visualization/crossbrowse.png)
- Cvit.js - genome-visualization/cvitjs.png)
- EasyFig - genome-visualization/easyfig.png)
- FastANI - genome-visualization/fastani.jpg)
- GCSnap - genome-visualization/gcsnap.png)
- GENESPACE
- Genome-plots-processing - genome-visualization/genome_plots_processing.png)
- GenomeMatcher - genome-visualization/genomematcher.png)
- GenomeSyn - genome-visualization/genomesyn.png)
- gggenomes - genome-visualization/gggenomes.png)
- GGisy - genome-visualization/ggisy.png)
- GIVE - genome-visualization/give_hic.png)
- Gmaj - genome-visualization/gmaj.png)
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- GSSPlayground - genome-visualization/gssplayground.png)
- JAX Synteny browser - genome-visualization/jax_synteny_browser.png)
- LinearDisplay.pl - genome-visualization/lineardisplay.png)
- mauve-viewer
- MCScanX - genome-visualization/mcscanx.png)
- mGSV (multiple genome synteny viewer) - genome-visualization/mgsv.jpg)
- ModDotPlot - genome-visualization/moddotplot.png)
- multiGenomicContext - genome-visualization/multicontext.png)
- Multiple genome viewer - genome-visualization/mgv.png)
- NGenomeSyn - genome-visualization/ngenomesyn.png)
- odp (oxford dot plots) - genome-visualization/odp.png)
- pafr - genome-visualization/pafr.png)
- PipMaker - example/index.html) [(img)](https://cmdcolin.github.io/awesome-genome-visualization/pipmaker.png)
- plotsr - genome-visualization/plotsr.png)
- pretzel - genome-visualization/pretzel.png)
- PSAT - genome-visualization/psat.png)
- pyGenomeViz - genome-visualization/pygenomeviz.png)
- r2cat - genome-visualization/r2cat.jpeg)
- RectChr - genome-visualization/rectchr.png)
- SafFire - genome-visualization/saffire.png)
- Smash++ - genome-visualization/smashpp.png)
- Synima - genome-visualization/synima.png)
- syntenyPlotteR
- SyntenyPortal - genome-visualization/syntenyportal.png)
- SYNY - genome-visualization/syny.png)
- ziplign - genome-visualization/tna.png)
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- TreeBrowser (MicrobesOnline) - genome-visualization/treegenome.png)
- Tripal MapViewer - genome-visualization/tripal_mapviewer.png)
- WGDI - genome-visualization/wgdi.png)
- BRIG - genome-visualization/brig.jpg)
- gbdraw - genome-visualization/gbdraw.png)
- MCScan (python version) - genome-visualization/mcscan_python.png)
- ntSynt - genome-visualization/ntsynt.png)

Programming Languages

Python 38 JavaScript 18 R 13 C++ 8 Rust 7 C 5 HTML 4 Java 3 TypeScript 3 Go 2

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Data

Tools

Indexes

Applications

Experiments

Awesome

awesome-genome-visualization

Commercial

Comparative