https://github.com/filip-husnik/genome-plots-processing

Processing scripts to visualize bacterial genome alignments
https://github.com/filip-husnik/genome-plots-processing

Last synced: 7 months ago
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Processing scripts to visualize bacterial genome alignments

• Host: GitHub
• URL: https://github.com/filip-husnik/genome-plots-processing
• Owner: filip-husnik
• License: mit
• Created: 2018-01-11T20:24:38.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2020-02-05T00:25:43.000Z (over 6 years ago)
• Last Synced: 2024-07-11T20:32:20.830Z (almost 2 years ago)
• Language: Processing
• Homepage:
• Size: 11 MB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-genome-visualization - Genome-plots-processing - genome-visualization/genome_plots_processing.png) (Comparative)

README

          
# Processing scripts to visualize bacterial genome alignments as linear (instead of circular, e.g. by Circos)

This repository contains [Processing](https://processing.org/) scripts to make figures such as Figure 1 from [Husnik & McCutcheon, PNAS 2016](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027413/). It's still a work in progress, but my goal is to make these scripts more flexible in the near future.

Husnik F & McCutcheon JP: Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis. [Proc Natl Acad Sci U S A 2016, 113(37): E5416–E5424](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027413/).

 

 ![alt text](https://github.com/filip-husnik/2016-PNAS-figure1/blob/master/Fig1_final.png)