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awesome-science

Awesome list of various tools for doing science
https://github.com/jdrusso/awesome-science

Last synced: 4 days ago
JSON representation

  • Plotting

    • Aquarel - Library for templating and styling Matplotlib.
    • brokenaxes - Nifty package for making plots w/ broken axes, which is a major PITA otherwise in mpl.

  • Analysis

    • MSM-WE - Tools for building history-augmented Markov state models from WESTPA weighted ensemble data.
    • CuPy - Python CUDA bindings for NumPy/SciPy.
    • Deeptime - Python library for analyzing time series data, and the successor to PyEmma. Includes a hefty Markov analysis library.

  • Simulation

    • WESTPA - The best weighted ensemble implementation in town!

  • Utilities

    • magic-wormhole - Simple Python tool for easily sending documents between computers.

  • Development

    • Pretty-Printing

      • Gum - Library for pretty-fying shell scripts.
      • Rich - Incredible library for gorgeous output in Python scripts. Useful for logging, progress bars, formatted output, live-updating tables.
      • GitBook - Nice alternative to readthedocs for making pretty docs pages.

    • Terminal emulators

      • Alacritty - Fast, GPU-accelerated terminal emulator.
      • Kitty - Blazing fast, GPU-accelerated terminal emulator - but a little more fragile than Alacritty.

    • Version control

      • git-rr - Script for showing filenames in interactive rebases

    • Multiplexers

      • Byobu - Clean wrapper around tmux that provides nicely formatted multiplexing.

    • Window managers

      • i3 - Tiling window manager.

    • IDEs

  • Data Management

    • SigOpt - Outstanding tool for hyperparameter optimization + managing data and parameters for many analysis runs.
    • SigOpt - Outstanding tool for hyperparameter optimization + managing data and parameters for many analysis runs.
Programming Languages
Python 7 Rust 1 Go 1
Categories
Development 9 Analysis 3 Plotting 2 Data Management 2 Simulation 1 Utilities 1
Sub Categories
Pretty-Printing 3 Terminal emulators 2 Version control 1 Multiplexers 1 Window managers 1 IDEs 1
Keywords
python 3 matplotlib 2 plotting 2 terminal 2 visualization 2 gpu 2 curand 1 cusolver 1 cusparse 1 cusparselt 1 cutensor 1 nccl 1 numpy 1 nvrtc 1 nvtx 1 rocm 1 scipy 1 cupy 1 cudnn 1 cuda 1 cublas 1 weighted-ensemble 1 molecular-dynamics 1 markov-model 1 theming 1 theme-development 1 theme 1 data-visualization 1 windows 1 vte 1 terminal-emulators 1 rust 1 opengl 1 macos 1 linux 1 bsd 1 tui 1 tracebacks-rich 1 traceback 1 terminal-color 1 tables 1 syntax-highlighting 1 rich 1 python3 1 python-library 1 progress-bar-python 1 progress-bar 1 markdown 1 emoji 1 ansi-colors 1